Gene

KWMTBOMO08777

Pre Gene Modal

BGIBMGA007888

Annotation

PREDICTED:_nuclear_receptor_GRF_isoform_X4_[Bombyx_mori]

Location

Bomo_Chr15(-):5004821-5016658      View in EpiBrowser

Transcription factor

GCNF-like

Location in the cell

Nuclear   Reliability : 3.496

CDS

ATGGATCTTGTCATAAAAAGCGAGTCGGCGGCCGACACCAGCACTTCGTCACCTGACCCAGGACCGCCTTCGCCGCGTATGTCTGAAGCCGGGTGCAGCACGCCGCCGCACCCGCCGCCCGTGTTCGATGGCGGTGGCTCTCCGTCACCTTCACCCGCTTGCCATCCCACCGTTATACGCTCGGCGCCACCCTACTCAGTCATCAAGTTTGAAGGTGCACAATCCGCTGTCAAAGCAGAAAGTTCGCCTGCGAGTGGAAAAAACCAGCCCACAACGCAGTCTCAGTTGTCTTCAGTGAAGTTGGAAAGCGCACCGCAAGAATCACCACAACCGTTCAGACCACGTACCCTCGTACCGCCTCCGCCTGGAGTTCACGCTAATCTATCACCAGGACATTGGCCGCCGGCCGCTTGTATAAATGGTGTTAAACCTGAACTTATAGGCGGAAATTTTCCACCACAGCCGATTGAAAATAAACCAGGTGCGCGTGGACAAACACAATGGAGAGGTACTCCTGCTGTTATAATGGGCGAATCCGGAGGTGTCCGAACAATGTTCTGGACCTTACCAGCGCCTAGTTCAAGTAGTGAGCCTGCAGCCAGTGCTTCGCATACTTCATCCACGCCTTCTCCTGATCCAGCTTCATGCAGTGAGGAGTCAGCAGCGAGGCTATTACTCAATTTAGGTGGCGAGTTACGACGACCTAGAGGGCCACCATTGAACATGGAACTACTCTGGGCCGGAGACGTGTCCCAGCTCCCTGCTCACCAACAAATTCATGCGTTAAATCTGAGCGCCGCTGCCGGAAGCATCGCGGGTTCTTCTCCAATGGCAGGTGCTAGTTCCTTAGCGTTACCCAGACCAGAACTGCGTACATATGCACCAGAGACTGAACGCGATGAAGACGAACAACCAATGATATGCATGATTTGCGAAGACAAAGCGACTGGACTGCATTACGGCATAATTACTTGTGAAGGCTGTAAGGGATTTTTCAAACGAACTGTCCAAAACAGAAGGGTTTACACGTGCGTCGCTGACGGTGGCTGTGAAATTACAAAGGCACAAAGAAATAGATGCCAGTATTGTAGATTCAAAAAATGTATTGAACAAGGAATGGTTCTACAAGCTGTACGAGAGGACAGGATGCCTGGTGGGAGGAACAGTGGAGCTGTTTACAATTTATACAAAGTGAAATATAAGAAGAACAAGAAAGCCAACAAAACAGCTACGGCTACAAGTCGAGCTTCGCCACCAGAAAAACCTAAAGAACCCTTACCCCCACTCCCACCGCATTTGGTCAATGGTACCATACTTAAGACTGCACTAACAAATCCCAGCGAGGTTGTTCATTTGAGAGCAAGGCTTGAAAGTGCCGTGTCGTCGTCACGAGATCGAGCCGTCCCTTTGGACAGGGCGCTGCACATGATTCGCGCTCTGATTGACTGTGACGCTATGGAAGACATTGCGACAGTACGACACCTCCCTGACTTGCTTCATGACACTTCGGAAATAAGCGACAAATTGTGTAAGATCGGTGACTCCATCGTGCACAAAATGGTCGCGTGGACGAAAAAACTACCGTTCATTATGGAAATCCCTATGGAAATACACTCAAAATTATTAATGGAAAAGTGGCATGAGATCTCAGTATTAACGACGGCGGCGTATCAAGCGATGCACGGAAAGCAGACCCACGCTCCTCCCTCGTCAGATCACGAACAGGACTTTATGCAAGAGGTAAACGCCAACCTCCGGACATTGCAGAATTGCTTGACGTCACTTATGGGCAGGCCCATTACGCTGGAGCAGTTGCGATTGGATGTAGGACTTGTCGTGGAAAAGATGACGCAGATAACCTGTGTTTTCCGTCGCATACAGCTCCGAATGGAGGAATACGTCTGCCTCAAAGTCTATATACTGCTTAATCAAGAAGTCGAACTCGAGGGAATCCAGGACCGCTACGTGCAAGTACTACGCAGCTACCTTGAACACGCCAACCCGCACCATCCGGGCAGGCTACAGGAACTGTTCGCCAGAATCCCAGAGATCCAGGCGGCGGCTAACTTGCTCCTCGAGAGCAAAATGTTCTACGTTCCGTTCGTGCTGAACTCGGCGGAGATCAGATAG

Protein

MDLVIKSESAADTSTSSPDPGPPSPRMSEAGCSTPPHPPPVFDGGGSPSPSPACHPTVIRSAPPYSVIKFEGAQSAVKAESSPASGKNQPTTQSQLSSVKLESAPQESPQPFRPRTLVPPPPGVHANLSPGHWPPAACINGVKPELIGGNFPPQPIENKPGARGQTQWRGTPAVIMGESGGVRTMFWTLPAPSSSSEPAASASHTSSTPSPDPASCSEESAARLLLNLGGELRRPRGPPLNMELLWAGDVSQLPAHQQIHALNLSAAAGSIAGSSPMAGASSLALPRPELRTYAPETERDEDEQPMICMICEDKATGLHYGIITCEGCKGFFKRTVQNRRVYTCVADGGCEITKAQRNRCQYCRFKKCIEQGMVLQAVREDRMPGGRNSGAVYNLYKVKYKKNKKANKTATATSRASPPEKPKEPLPPLPPHLVNGTILKTALTNPSEVVHLRARLESAVSSSRDRAVPLDRALHMIRALIDCDAMEDIATVRHLPDLLHDTSEISDKLCKIGDSIVHKMVAWTKKLPFIMEIPMEIHSKLLMEKWHEISVLTTAAYQAMHGKQTHAPPSSDHEQDFMQEVNANLRTLQNCLTSLMGRPITLEQLRLDVGLVVEKMTQITCVFRRIQLRMEEYVCLKVYILLNQEVELEGIQDRYVQVLRSYLEHANPHHPGRLQELFARIPEIQAAANLLLESKMFYVPFVLNSAEIR

Similarity

Belongs to the nuclear hormone receptor family.

Uniprot

H9JEE1   Q9Y1J8   Q8WSJ4   A0A194QT15   A0A2H1WT23   A0A2A4K6X3   + More
A0A2A4K6H2   A0A437AYE9   A0A212EIL4   I4DQV1   A0A0L7LJX1   Q8MWQ8   A0A0N9JNQ4   A0A194PQA1   E0VGZ2   A0A1J1HW35   A0A1S4FBT4   Q178K1   T1I924   A0A223HFP5   O61228   D6W9P7   A0A139WN28   A0A291NL70   A0A291NL64   A0A151IL60   A0A151I2J4   F4W3W9   A0A1S5UZQ3   A0A067R4K9  

Pubmed

19121390    10542063    11378418    26354079    22118469    22651552    + More
26227816    12020840    26325588    20566863    17510324    10518792    18362917    19820115    21719571    24845553   

EMBL

BABH01002941    AF124981    AAD38900.1    AF288088    AAL50350.1    KQ461195    + More
KPJ06681.1    ODYU01010856    SOQ56215.1    NWSH01000105    PCG79503.1    PCG79504.1    RSAL01000268    RVE43218.1    AGBW02014626    OWR41311.1    AK404797    BAM20291.1    JTDY01000831    KOB75742.1    AF411258    AAM54498.1    KT363838    ALG36657.1    KQ459596    KPI95492.1    DS235154    EEB12648.1    CVRI01000021    CRK91572.1    AM773447    CH477362    CAO79105.1    EAT42641.2    ACPB03003492    ACPB03003493    KX431894    AST48088.1    AJ005685    CAA06670.1    KQ971312    EEZ99212.2    KYB29221.1    KX947289    ATI99808.1    KX947288    ATI99807.1    KQ977133    KYN05493.1    KQ976534    KYM81475.1    GL887490    EGI71104.1    KX373876    AQN67835.1    KK852705    KDR18027.1   

Proteomes

UP000005204    UP000053240    UP000218220    UP000283053    UP000007151    UP000037510    + More
UP000053268    UP000009046    UP000183832    UP000008820    UP000015103    UP000007266    UP000078542    UP000078540    UP000007755    UP000027135   

PRIDE

H9JEE1    Q9Y1J8   

Pfam

PF00104   Hormone_recep        + More
PF00105   zf-C4

Interpro

IPR035500   NHR-like_dom_sf        + More
IPR001723   Nuclear_hrmn_rcpt       
IPR013088   Znf_NHR/GATA       
IPR000536   Nucl_hrmn_rcpt_lig-bd       
IPR001628   Znf_hrmn_rcpt       

SUPFAM

SSF48508   SSF48508       

Gene 3D

1.10.565.10     3.30.50.10    

ProteinModelPortal

H9JEE1   Q9Y1J8   Q8WSJ4   A0A194QT15   A0A2H1WT23   A0A2A4K6X3   + More
A0A2A4K6H2   A0A437AYE9   A0A212EIL4   I4DQV1   A0A0L7LJX1   Q8MWQ8   A0A0N9JNQ4   A0A194PQA1   E0VGZ2   A0A1J1HW35   A0A1S4FBT4   Q178K1   T1I924   A0A223HFP5   O61228   D6W9P7   A0A139WN28   A0A291NL70   A0A291NL64   A0A151IL60   A0A151I2J4   F4W3W9   A0A1S5UZQ3   A0A067R4K9  

PDB

5KRB     E-value=6.58168e-31,     Score=337

KEGG

692565    K09185 nuclear receptor subfamily 6 group A | (RefSeq) Grf; nuclear receptor GRF

GO

GO:0003700   GO:0008270   GO:0005634   GO:0043565   GO:0003707   GO:0005667   GO:0000978   GO:0004879   GO:0006355   GO:0043401   GO:0003677   GO:0016876   GO:0043039  

Subcellular location

Nucleus  

Length:

709

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.05297

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00034

outside

1  -  709

 

 

Pi

190.733457

Theta

153.908026

Tajima's D

0.951734

CLR

0.198878

CSRT

0.644217789110545

Interpretation

Uncertain