HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	18.1	0.8	4.3e-05	0.0026	2	23	153	175
2	20.8	2.3	5.7e-06	0.00034	1	23	180	202
3	18.6	3.8	2.8e-05	0.0017	1	23	208	230
4	11.4	3.6	0.0054	0.32	1	23	236	258
5	27.3	0.1	5e-08	3e-06	1	23	263	285
6	13.1	0.2	0.0016	0.097	1	23	291	313
7	17.6	1.9	5.9e-05	0.0035	3	23	321	341
8	14.3	0.2	0.00068	0.041	1	23	347	370

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 4.3e-05
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +Cp+C+k F++k  +++H+   H
  KWMTBOMO08603 153 VCPVCHKGFTSKAWFNKHMVNeH 175
                    6******************8777 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 5.7e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++C+k+F+   +Lk+H+ tH
  KWMTBOMO08603 180 YMCNECSKTFNKITQLKSHMTTH 202
                    89********************9 PP

  == domain 3  score: 18.6 bits;  conditional E-value: 2.8e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C+ Cgk++k++ +L++H+r H
  KWMTBOMO08603 208 FICSTCGKRYKHRKQLTTHLRAH 230
                    78*******************99 PP

  == domain 4  score: 11.4 bits;  conditional E-value: 0.0054
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C+ C+k+Fk ks Lk H+++H
  KWMTBOMO08603 236 YACETCNKRFKLKSVLKCHMKVH 258
                    88*******************99 PP

  == domain 5  score: 27.3 bits;  conditional E-value: 5e-08
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++Cg+sF + snL +Hir+H
  KWMTBOMO08603 263 YLCSYCGWSFAQASNLAVHIRSH 285
                    66********************9 PP

  == domain 6  score: 13.1 bits;  conditional E-value: 0.0016
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C++Cg +   +s+L+rH r H
  KWMTBOMO08603 291 HACGVCGFRAAASSSLRRHARAH 313
                    56*******************98 PP

  == domain 7  score: 17.6 bits;  conditional E-value: 5.9e-05
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C +Cgk F + s L rH+rtH
  KWMTBOMO08603 321 CAHCGKGFYDASALGRHRRTH 341
                    9*******************9 PP

  == domain 8  score: 14.3 bits;  conditional E-value: 0.00068
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+Cp+C + F+++   k+H+++ H
  KWMTBOMO08603 347 YQCPGCARAFPDSWKRKTHLMRaH 370
                    9********************999 PP