Silkworm Genome Informatics Database

Gene

KWMTBOMO08603

Pre Gene Modal

BGIBMGA007616

Annotation

PREDICTED:_zinc_finger_protein_664-like_[Amyelois_transitella]

Location

Bomo_Chr15(+):827413-832078 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 3.208

CDS

ATGAAAGAAGTAGCGTCCTGGGAGAGAGAGAACTTCGATCCAAAAGCTGTGGAAATGTTTTGTTTTTGTACTAATATAAAAGTATTTGATGGAGACACCCTACCAAAGCAGTTCTGTTACGATTGCACTATTAAAATAGAATCAGCATACACATTCATCACGGAAGCCTTAAAAGTAAATGTAACTCTCAAAAACATAATATCAAATACCAACATAGTCATTACCGTGCAACCAGATCTGAAGAATACCGAAGGCTTAGAGAGTCGTCTAACTTTACCTGAATGCAAGATAAGTAGTACGATCGAAAATTACAGTGACATAATTTTGAATGCTCTTGACTACGTACATCTTAATGAAAGTGAGCCCGAAAAAGTCCCAGAACAAAATGTATTGAATAATCATCAAGAACGAGTTTGTGAAGAAAAAAAAGACATAAAAGTAGAAGAAAAGAAAAACGTATGCCCCGTTTGCCATAAAGGATTCACATCTAAAGCTTGGTTCAACAAACACATGGTTAATGAACATAATGGCCAGAAGTACATGTGTAATGAGTGCTCCAAAACTTTCAACAAGATCACACAGCTCAAGTCCCATATGACAACACATGCGGAGGATCGCAAATTCATTTGCTCAACATGTGGAAAGAGATATAAGCATCGTAAACAGCTGACCACACACCTCAGAGCACACTCAGATGTACGTCCTTACGCTTGTGAAACTTGTAACAAGAGGTTTAAACTGAAAAGTGTGTTAAAGTGTCACATGAAAGTTCACAGTGACAAACAGTACCTATGTTCATACTGTGGCTGGAGTTTTGCTCAAGCTAGCAACCTCGCGGTCCACATCCGCTCGCACACGGGCGAGAAGCCTCACGCGTGCGGCGTGTGCGGGTTCCGCGCGGCCGCCAGCTCCTCGCTGCGGCGCCACGCGCGCGCGCACGCACGAGCCCGCACGCACCTCTGCGCACACTGCGGGAAGGGATTCTACGACGCCAGCGCCCTGGGTCGACACCGTCGCACGCACACCGGGGAGCTCCCCTACCAGTGCCCGGGGTGCGCACGAGCCTTCCCCGACAGCTGGAAACGGAAGACTCATCTCATGCGCGCGCACAGACTCGCTCTGCACGACATACCGCGCATGCGCAGAGATGGCAGGACCCTCAACTAA

Protein

MKEVASWERENFDPKAVEMFCFCTNIKVFDGDTLPKQFCYDCTIKIESAYTFITEALKVNVTLKNIISNTNIVITVQPDLKNTEGLESRLTLPECKISSTIENYSDIILNALDYVHLNESEPEKVPEQNVLNNHQERVCEEKKDIKVEEKKNVCPVCHKGFTSKAWFNKHMVNEHNGQKYMCNECSKTFNKITQLKSHMTTHAEDRKFICSTCGKRYKHRKQLTTHLRAHSDVRPYACETCNKRFKLKSVLKCHMKVHSDKQYLCSYCGWSFAQASNLAVHIRSHTGEKPHACGVCGFRAAASSSLRRHARAHARARTHLCAHCGKGFYDASALGRHRRTHTGELPYQCPGCARAFPDSWKRKTHLMRAHRLALHDIPRMRRDGRTLN

Uniprot

H9JDL9 A0A2A4JB14 A0A212F5C3 A0A2H1WMM3 A0A0N1PKF7 A0A194PRG2 + More
A0A3S2NTV5 A0A0L7KQC8 A0A3B3I9A0

Pubmed

19121390 22118469 26354079 26227816 17554307

EMBL

BABH01003313 BABH01003314 NWSH01002297 PCG68612.1 AGBW02010203 OWR48941.1 + More
ODYU01009703 SOQ54319.1 KQ459717 KPJ20293.1 KQ459596 KPI95339.1 RSAL01000083 RVE48457.1 JTDY01007519 KOB65144.1

Proteomes

UP000005204 UP000218220 UP000007151 UP000053240 UP000053268 UP000283053 + More
UP000037510 UP000001038

PRIDE

H9JDL9

Pfam

PF00096   zf-C2H2        + More
PF00025   Arf
PF07776   zf-AD

Interpro

IPR006689   Small_GTPase_ARF/SAR        + More
IPR036236   Znf_C2H2_sf
IPR027417   P-loop_NTPase
IPR013087   Znf_C2H2_type
IPR012934   Znf_AD

SUPFAM

SSF52540 SSF52540 + More
SSF57667 SSF57667

ProteinModelPortal

H9JDL9 A0A2A4JB14 A0A212F5C3 A0A2H1WMM3 A0A0N1PKF7 A0A194PRG2 + More
A0A3S2NTV5 A0A0L7KQC8 A0A3B3I9A0

PDB

5V3G E-value=2.02107e-26, Score=296

KEGG

101739033 no KO assigned | (RefSeq) zinc finger protein 664-like

GO

GO:0003676 GO:0005525 GO:0008270 GO:0005634 GO:0046872 GO:0009982 GO:0016620 GO:0006418 GO:0016876 GO:0043039

Length:

388

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00466

Exp number, first 60 AAs:

0.00066

Total prob of N-in:

0.03193

outside

1 - 388

Pi

237.000849

Theta

135.008241

Tajima's D

2.112105

CLR

0.722717

CSRT

0.898355082245888

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics