HMM length of domain: 69 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	61.8	0.4	8.4e-20	5.9e-17	1	68	127	194
2	-1.5	2.0	4.7	3.3e+03	44	63	319	338

  Alignments for each domain:
  == domain 1  score: 61.8 bits;  conditional E-value: 8.4e-20
                    --SS--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHCCH CS
            HMG   1 pkRplsafflfskeqraklkaenPelknaeiskklgekWkalseeeKkkYeekaekekaryekekpey 68 
                    p +pl+ ++++s+   +++ka +P+lk  ei++++g +W++l+e+eK+ + +++e+ek +yek  ++y
  KWMTBOMO08361 127 PEKPLMPYMRYSRRVWDSVKAAHPDLKLWEIGRIIGGMWRDLPESEKAGFVDEYEAEKSEYEKSLKAY 194
                    689**************************************************************999 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 4.7
                    HHHHHHHHHHHHHHHHHHHH CS
            HMG  44 eeeKkkYeekaekekaryek 63 
                    e++K+k++e +e+ +++ +k
  KWMTBOMO08361 319 EAKKRKFIESSEAFQEELKK 338
                    67899999999988888776 PP