HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	13.1	2.4	0.0015	0.093	1	23	406	429
2	12.9	4.1	0.0019	0.11	3	23	566	586
3	20.6	0.6	6.9e-06	0.00041	1	23	591	613
4	16.0	1.3	0.00019	0.012	1	23	619	641
5	24.1	1.2	5.2e-07	3.1e-05	1	23	647	669
6	20.4	3.9	7.7e-06	0.00046	1	23	675	697
7	21.9	1.0	2.5e-06	0.00015	1	23	703	725

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.0015
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y C +C+ksF+ + + ++Hi+  H
  KWMTBOMO08128 406 YSCAKCSKSFRKQKQCEAHIKEaH 429
                    89*******************988 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.0019
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    Cp+C+++F ++s+L  H  +H
  KWMTBOMO08128 566 CPHCSRVFYHRSSLFYHVLSH 586
                    ******************999 PP

  == domain 3  score: 20.6 bits;  conditional E-value: 6.9e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C++Cgk F ++  Lk H+r+H
  KWMTBOMO08128 591 HACKECGKAFYTSGALKIHRRVH 613
                    56********************9 PP

  == domain 4  score: 16.0 bits;  conditional E-value: 0.00019
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykC++Cg  F+++ +Lk H  +H
  KWMTBOMO08128 619 YKCDVCGHDFRQWTDLKYHKVIH 641
                    9******************8777 PP

  == domain 5  score: 24.1 bits;  conditional E-value: 5.2e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC+ Cgk F rk++L++H+r+H
  KWMTBOMO08128 647 FKCEFCGKEFARKYSLNVHRRIH 669
                    8*********************9 PP

  == domain 6  score: 20.4 bits;  conditional E-value: 7.7e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykC++C+ksF+ +s   +H++tH
  KWMTBOMO08128 675 YKCDYCTKSFRASSYRLSHMKTH 697
                    9*********************9 PP

  == domain 7  score: 21.9 bits;  conditional E-value: 2.5e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykC+ C+ksF+   +LkrH  tH
  KWMTBOMO08128 703 YKCEQCDKSFRVAFDLKRHVLTH 725
                    9*********************9 PP