HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	3.7	0.4	1.5	91	2	20	41	60
2	16.1	1.1	0.00018	0.011	1	23	85	107
3	14.7	3.9	0.00049	0.03	1	23	113	135
4	13.4	0.8	0.0013	0.076	1	23	141	164
5	6.3	0.9	0.23	13	2	23	173	195
6	7.1	0.4	0.13	8	2	19	421	438
7	9.3	1.0	0.026	1.5	2	21	449	468

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 1.5
                   EETTTT.EEESSHHHHHHHH CS
        zf-C2H2  2 kCpdCg.ksFkrksnLkrHi 20
                   kC+ C+  s ++   L +H+
  KWMTBOMO08001 41 KCTTCNnFSTSSVRTLSTHM 60
                   8******************9 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 0.00018
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++C+++F++  n++rH ++H
  KWMTBOMO08001  85 FECDVCNMKFSNGANMRRHKMRH 107
                    89*******************99 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 0.00049
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C +C k+F rk++L  H  tH
  KWMTBOMO08001 113 YECRVCQKRFFRKDHLAEHFTTH 135
                    99*****************9999 PP

  == domain 4  score: 13.4 bits;  conditional E-value: 0.0013
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y Cp+C++ F r+  +++H +  H
  KWMTBOMO08001 141 YHCPICNRGFQRQIAMRAHFQNeH 164
                    89*****************98877 PP

  == domain 5  score: 6.3 bits;  conditional E-value: 0.23
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +Cp C+++ ++  +L++H    H
  KWMTBOMO08001 173 TCPLCSYRAPTMKSLRVHFLNrH 195
                    7*****************88777 PP

  == domain 6  score: 7.1 bits;  conditional E-value: 0.13
                    EETTTTEEESSHHHHHHH CS
        zf-C2H2   2 kCpdCgksFkrksnLkrH 19 
                    +C+ C+ +F+++ ++  H
  KWMTBOMO08001 421 VCTFCSITFPDSTLYFLH 438
                    7************99999 PP

  == domain 7  score: 9.3 bits;  conditional E-value: 0.026
                    EETTTTEEESSHHHHHHHHH CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHir 21 
                    kC++Cg+ +++ +++++H+ 
  KWMTBOMO08001 449 KCNICGEQCCNVYEFNSHLL 468
                    8*****************85 PP