Gene

KWMTBOMO08001  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001139

Annotation

PREDICTED:_ikaros_family_zinc_finger_protein_isoform_X2_[Papilio_xuthus]

Location

Bomo_Chr13(-):12158612-12165903      View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 3.874

CDS

ATGTCATCTAAAGGGGAAACAGAGGCCGATTCAGGCACGGTGTCGCCAAATTTGAACACGGAGAAAAATGAACCTGTTGCTACTGTCAGTAAAGAAACATCAAAAAGAGGTACTACTTTAAAATGTACCACTTGCAACAATTTTTCCACTTCGAGCGTTCGAACTTTATCCACACATATGGGCCAATGTTTCCCTGATAATAACAATGTGGCCGCTGCACAGAATACAGACACGCGTCCACATAGAAAAATATTCGAATGCGATGTGTGCAATATGAAGTTTTCAAATGGAGCTAACATGCGTCGACATAAAATGCGGCATACAGGGGTCAAACCGTACGAATGTCGCGTTTGTCAGAAAAGATTCTTCAGAAAAGATCATTTGGCCGAACATTTTACAACCCACACTAAAAGCTTGCCGTATCATTGCCCAATATGCAATAGAGGATTCCAGCGTCAAATTGCCATGCGTGCTCATTTCCAAAACGAACATGTCGGACAGCACGACCTCGTCAAAACTTGCCCTTTGTGTAGTTACCGCGCCCCGACCATGAAGAGTCTTCGAGTACATTTCTTAAACAGACACGGCATAGATCTCGATAACCCCGGGCCCGGCAACAACTCGGTGTCGGTGCTGGCGGCGGGCATCGCGAACGCGGCGTACGGCGAGGGCTCCATGGACCCGAGCACCATGTCGGCGCTGGGCGCGCTGGGCTCCGGGCTGTCCGTGTCGGTGGCGGCCGCGTACTCCGACAGCGGCGACAGCAACGGCGCGCGCTCGCTCGACAACGCCACGCCGCCTATGCACTATCTCACCCCGCACGTCGAAATATCGATGGCCGACAACAACGAAACTTTCTCACCTGCTCAAAACCATTCCGATTCTCGTGTTAACGGCGAGGGTCCCAGCTCTCCGCAATCAGGCGACAGCGCTATCGCCAGTAGCTCCCTCACCGCCGGCCTGCCTGCTAACATCACTCCCTCCATCACTCTCATACCCATCAAGCAGGAGCCAAACACGCAGGAGGAAGGTTCGGGCGACGGCGGCGGCGAGACCAACGGCGACAAGCGCGGCGTGTCGTCTAGTCTCTCGTCAATCATTAAAGTATCGCCCCTTAAAAGCTTACTCAGGGAAGATCTACGTCGCCGTATAACAGCCCGCGGCCGCGGGAACCGCTCTAACGGTTCCCGCGCGTCTCCTTCCGAGGGCGGCGTGATCACGTCGACATACGGCGACGCGGCGATGTTGCCGTCGTCGCTGGTGTGCACGTTCTGCTCCATAACGTTCCCGGACTCGACGCTGTACTTCCTGCACAAGGGCTGCCACTGCGACTCCAACCCGTGGAAGTGTAACATCTGCGGCGAGCAGTGCTGCAACGTATACGAGTTCAACTCTCACCTGTTAATACTCAGCTGCACTTAA

Protein

MSSKGETEADSGTVSPNLNTEKNEPVATVSKETSKRGTTLKCTTCNNFSTSSVRTLSTHMGQCFPDNNNVAAAQNTDTRPHRKIFECDVCNMKFSNGANMRRHKMRHTGVKPYECRVCQKRFFRKDHLAEHFTTHTKSLPYHCPICNRGFQRQIAMRAHFQNEHVGQHDLVKTCPLCSYRAPTMKSLRVHFLNRHGIDLDNPGPGNNSVSVLAAGIANAAYGEGSMDPSTMSALGALGSGLSVSVAAAYSDSGDSNGARSLDNATPPMHYLTPHVEISMADNNETFSPAQNHSDSRVNGEGPSSPQSGDSAIASSSLTAGLPANITPSITLIPIKQEPNTQEEGSGDGGGETNGDKRGVSSSLSSIIKVSPLKSLLREDLRRRITARGRGNRSNGSRASPSEGGVITSTYGDAAMLPSSLVCTFCSITFPDSTLYFLHKGCHCDSNPWKCNICGEQCCNVYEFNSHLLILSCT

Uniprot

H9IV59   A0A2A4J850   A0A194Q5Y8   A0A2H1V5D1   A0A212FNY5   A0A0L7LAX2   + More
A0A3S2M1D8   A0A194R9H8   D1ZZX4   N6UH32   A0A158P223   A0A1B6IDK4   F4W6A7   A0A0L7R742   A0A1B6FGT3   E2ACS5   A0A1B6MR62   A0A151IEQ9   A0A1B6KV28   A0A0C9QRA5   A0A2S2NP28   J9K8Z2   A0A195AVJ7   A0A195FIB0   A0A2A3E1M7   A0A088A2V9   A0A1Y1K088   A0A2S2QVZ1   A0A1W4XFI2   A0A1B0CDE9   U4UT73   A0A0T6BCQ3   A0A1B6CBA8   A0A1B0DPJ5   K7IYV0   W8BKQ0  

Pubmed

19121390    26354079    22118469    26227816    18362917    19820115    + More
23537049    21347285    21719571    20798317    28004739    20075255    24495485   

EMBL

BABH01000557    NWSH01002453    PCG68265.1    KQ459439    KPJ00953.1    ODYU01000577    + More
SOQ35592.1    AGBW02004200    OWR55458.1    JTDY01001914    KOB72549.1    RSAL01000074    RVE48951.1    KQ460761    KPJ12521.1    KQ971338    EFA01781.1    APGK01020604    APGK01020605    KB740224    ENN81025.1    ADTU01006968    GECU01022697    JAS85009.1    GL887707    EGI70242.1    KQ414642    KOC66702.1    GECZ01020358    JAS49411.1    GL438568    EFN68819.1    GEBQ01001556    JAT38421.1    KQ977858    KYM99310.1    GEBQ01024665    JAT15312.1    GBYB01006239    JAG76006.1    GGMR01006312    MBY18931.1    ABLF02034899    KQ976731    KYM76258.1    KQ981523    KYN40410.1    KZ288449    PBC25600.1    GEZM01099053    GEZM01099052    JAV53530.1    GGMS01012705    MBY81908.1    AJWK01007760    KB632354    ERL93356.1    LJIG01001918    KRT85022.1    GEDC01026689    JAS10609.1    AJVK01008117    GAMC01009012    JAB97543.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000037510    UP000283053    + More
UP000053240    UP000007266    UP000019118    UP000005205    UP000007755    UP000053825    UP000000311    UP000078542    UP000007819    UP000078540    UP000078541    UP000242457    UP000005203    UP000192223    UP000092461    UP000030742    UP000092462    UP000002358   

PRIDE

H9IV59   

Pfam

PF00096   zf-C2H2

Interpro

IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf       

SUPFAM

SSF57667   SSF57667       

ProteinModelPortal

H9IV59   A0A2A4J850   A0A194Q5Y8   A0A2H1V5D1   A0A212FNY5   A0A0L7LAX2   + More
A0A3S2M1D8   A0A194R9H8   D1ZZX4   N6UH32   A0A158P223   A0A1B6IDK4   F4W6A7   A0A0L7R742   A0A1B6FGT3   E2ACS5   A0A1B6MR62   A0A151IEQ9   A0A1B6KV28   A0A0C9QRA5   A0A2S2NP28   J9K8Z2   A0A195AVJ7   A0A195FIB0   A0A2A3E1M7   A0A088A2V9   A0A1Y1K088   A0A2S2QVZ1   A0A1W4XFI2   A0A1B0CDE9   U4UT73   A0A0T6BCQ3   A0A1B6CBA8   A0A1B0DPJ5   K7IYV0   W8BKQ0  

PDB

2I13     E-value=3.94155e-13,     Score=182

KEGG

101743264    no KO assigned | (RefSeq) DNA-binding protein Ikaros

GO

GO:0003676   GO:0003677   GO:0003700   GO:0045944   GO:0005654   GO:0044212   GO:0040034   GO:0000981   GO:0046872   GO:0006468   GO:0005509   GO:0016020   GO:0005524   GO:0006412   GO:0016876   GO:0043039  

Length:

473

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.05344

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00431

outside

1  -  473

 

 

Pi

176.839216

Theta

181.029315

Tajima's D

-0.659955

CLR

1.637012

CSRT

0.207939603019849

Interpretation

Uncertain