HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	18.9	0.8	2.3e-05	0.0014	1	23	10	32
2	22.0	1.7	2.3e-06	0.00014	1	23	68	90
3	16.9	1.4	0.0001	0.0061	3	23	98	118
4	26.7	1.7	7.6e-08	4.5e-06	1	23	124	146

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.3e-05
                   EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                   + C++C+k F++k +  +Hi +H
  KWMTBOMO07403 10 FFCDYCSKGFRSKTSIAVHILKH 32
                   78********************9 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 2.3e-06
                   EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                   ykC+ C+  F+++  Lk+Hi++H
  KWMTBOMO07403 68 YKCHRCPAEFRTSNGLKVHINRH 90
                   9*********************9 PP

  == domain 3  score: 16.9 bits;  conditional E-value: 0.0001
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C++C+ +F + s L +H+rtH
  KWMTBOMO07403  98 CEYCPAKFYSASVLIKHRRTH 118
                    ********************9 PP

  == domain 4  score: 26.7 bits;  conditional E-value: 7.6e-08
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++C+k F+ ++nLk H+r+H
  KWMTBOMO07403 124 YVCKVCSKAFTGNHNLKLHMRVH 146
                    9*********************9 PP