HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	7.1	2.5	0.13	7.7	3	23	295	315
2	16.1	5.8	0.00018	0.011	1	23	327	349
3	12.8	0.5	0.002	0.12	5	23	493	512
4	10.5	0.2	0.011	0.66	1	20	534	553
5	10.9	0.3	0.0083	0.5	1	23	573	595
6	7.7	1.8	0.085	5.1	2	23	618	639

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.13
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C +C k  ++  +L+rH++ H
  KWMTBOMO07252 295 CYECRKQMTSATSLQRHMQAH 315
                    999****************95 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 0.00018
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C  C++sF+r   LkrH+  H
  KWMTBOMO07252 327 YRCRNCTRSFCRLFTLKRHLAQH 349
                    9*******************988 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 0.002
                    TTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   5 dCgksFkrksnLkrHirt.H 23 
                    +Cg++Fk+k +L  Hi + H
  KWMTBOMO07252 493 ECGRVFKSKISLAEHIHSdH 512
                    7***************9988 PP

  == domain 4  score: 10.5 bits;  conditional E-value: 0.011
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHi 20 
                    y+C++C ++Fkr+  L++H+
  KWMTBOMO07252 534 YTCEVCEQKFKRRGILVNHL 553
                    9************9999996 PP

  == domain 5  score: 10.9 bits;  conditional E-value: 0.0083
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C +C+k++ +    ++H r+H
  KWMTBOMO07252 573 FPCVVCPKVYGTAAKRNQHVRVH 595
                    89********************6 PP

  == domain 6  score: 7.7 bits;  conditional E-value: 0.085
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C+ C++ + ++  + +H r H
  KWMTBOMO07252 618 QCSFCPRQYATRAKMLQHARLH 639
                    7********************6 PP