Silkworm Genome Informatics Database

Gene

KWMTBOMO07252

Pre Gene Modal

BGIBMGA010360

Annotation

PREDICTED:_PR_domain_zinc_finger_protein_10-like_isoform_X3_[Bombyx_mori]

Location

Bomo_Chr12(-):9136195-9149040 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.734

CDS

ATGGATACATATAGCATGAAGGTGGGAAATCAAAGACCTCAAAAAGAAATTTACATAATTGAAATAAAACCAAGTTTATCTGGTACATACCCACAGTTTATAGACTCACAAGGCATTCCTCTACAGATTTTACAAAACACCCCCCTACATGTAGTAACAAAAGACGATCAATACTCATCAATTCCATCAATAAGTTATAAGTCTCAAGACCAGATGAATGTTACTCTTGCGAATGAAACGTCAGACAAAGCTTCAGAGATTGATGATAACTTTCAAGCTTTAACTACTGAAACACTGAGAATCGAAGCACCAACTGTTTTCACATGTATTCCTATGAGTAACATAGTAAAGCAAAGACAAATGGAAGACAAAACTAAAATAACACAGGACTATGTGCATATACCTGACAAACCTGTGCTACAGAGAGCAATTGCAGTACTACCATCAACACTACAGCTACGAAGAGGTATTGTTACACCTCGTAAGCTACTTCCACCTCGGGTGCGATTTGGACCTATACAAGGTATAAAGAGGATAATATCTCCAAATGAAGTGAATGATCTAAAAACCAAAGCAGCTTTAAACAAGACACCACTATATTTGTTGAAAGAAAATAATCAAACCATACATTTAGATGTATCAGATAAAGATAAAGCCAACTGGCTTTGTTTACTCCCTTTGGGTGAACAAGATACAGCAAACGTGTGGATATATGAAGACGATGGTGAATTATACGGTATAACCACGCACGTCATACCAACACGAAATGCACTGTCTTTGGGTTATAGTAAGGCGTATTGTGATGAACATAAGTTCGCAGATGCAATGCCAGTGAAGGATCTAGATGAAGAATACGCAGCAGCGTCTAAAGAGCAATGGTGGTGTTACGAATGTCGTAAACAGATGACATCGGCGACTTCACTACAACGACACATGCAAGCCCATCACCATGAAGAAAAAGCGATTCCTCAGAAACGTTATCGATGTCGTAATTGTACTCGAAGCTTTTGCAGGCTGTTCACATTAAAGCGGCATTTAGCACAGCATTGCCTAAAGAAAGATTTCATAACACAAGAAAAGCTAAACAATTCGGAACAGAATTTGACTGATTCTAGTCACAACTTCTCTCAAACTCTTGACGACAATAGAACACCGTCAGATGAAAGTTTTCAAAATTACACGAACGGTCTGGATTTCTCAACGAATCTTTTCGACGATCGCATGGCCGGTCTCGATATATCAAACTCCAGGCCCGAAACTGAATACAATCCTTATTCGCTCGACGATAGAGTCGATAATCTTTTGACTAGTCAACTCGATTTTCCGAATACCATGCAACAGAATGAAATTAATAACGAGAATATACCAGTACATGAGACAAAGACTCTAGTTTCGTGTACCGTTTGCAATAAAGATGTTGAAAAGGAGAACAAACGAGTGCATTTAAAAGAGTGTCGAAGGAGTTCATTAAGATGCGAATGCGGCAGAGTCTTCAAGAGTAAAATTAGTCTAGCAGAACACATTCACTCGGACCACACTTCGAAGATAACTGACAATACGGAACTCAAATTAGCACCGGTCTCAACAAATGAATATAATTATACTTGTGAAGTATGTGAACAAAAATTCAAGCGTCGAGGCATATTGGTTAACCATTTGTGGCGCGTTCACAATATATCCGATTCTAAAGTGCCTTTGGAGAAACGCGTGCGCCATTTCCCGTGCGTGGTGTGCCCCAAAGTGTACGGAACCGCCGCGAAGAGGAACCAACACGTGCGGGTGCATCATCCAGGCGCTGAAAAAATTCCAGCGCAGTCAATAGAAGGCGGCGTCCGCGTGTACGAGCCGGCCCAGTGCTCGTTCTGTCCGCGCCAGTACGCCACGCGGGCCAAGATGCTGCAACACGCCAGACTACACCATCCACATCTGATGAAACGACGTGTCGAAGAGAAATAA

Protein

MDTYSMKVGNQRPQKEIYIIEIKPSLSGTYPQFIDSQGIPLQILQNTPLHVVTKDDQYSSIPSISYKSQDQMNVTLANETSDKASEIDDNFQALTTETLRIEAPTVFTCIPMSNIVKQRQMEDKTKITQDYVHIPDKPVLQRAIAVLPSTLQLRRGIVTPRKLLPPRVRFGPIQGIKRIISPNEVNDLKTKAALNKTPLYLLKENNQTIHLDVSDKDKANWLCLLPLGEQDTANVWIYEDDGELYGITTHVIPTRNALSLGYSKAYCDEHKFADAMPVKDLDEEYAAASKEQWWCYECRKQMTSATSLQRHMQAHHHEEKAIPQKRYRCRNCTRSFCRLFTLKRHLAQHCLKKDFITQEKLNNSEQNLTDSSHNFSQTLDDNRTPSDESFQNYTNGLDFSTNLFDDRMAGLDISNSRPETEYNPYSLDDRVDNLLTSQLDFPNTMQQNEINNENIPVHETKTLVSCTVCNKDVEKENKRVHLKECRRSSLRCECGRVFKSKISLAEHIHSDHTSKITDNTELKLAPVSTNEYNYTCEVCEQKFKRRGILVNHLWRVHNISDSKVPLEKRVRHFPCVVCPKVYGTAAKRNQHVRVHHPGAEKIPAQSIEGGVRVYEPAQCSFCPRQYATRAKMLQHARLHHPHLMKRRVEEK

Uniprot

A0A3Q2XZS3

Proteomes

UP000264820

Pfam

PF00096 zf-C2H2

Interpro

IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf
IPR001214   SET_dom

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

A0A3Q2XZS3

PDB

3IHX E-value=2.51264e-05, Score=116

KEGG

101735754 no KO assigned | (RefSeq) PR domain zinc finger protein 10-like

GO

GO:0046872 GO:0003676 GO:0004645 GO:0030170 GO:0006520 GO:0006508 GO:0008237 GO:0043401 GO:0003707 GO:0051537

Length:

651

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00438

Exp number, first 60 AAs:

0.00315

Total prob of N-in:

0.00157

outside

1 - 651

Pi

2.138415

Theta

4.034552

Tajima's D

-2.100936

CLR

374.403198

CSRT

0.00549972501374931

Interpretation

Possibly Positive selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics