HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	7.5	1.0	0.095	5.7	3	23	144	164
2	9.5	0.2	0.022	1.3	2	23	205	225
3	20.9	0.5	5.4e-06	0.00032	1	23	231	254
4	17.8	1.0	5.3e-05	0.0032	1	23	260	283
5	22.0	2.5	2.3e-06	0.00014	1	23	289	311
6	17.0	5.1	9e-05	0.0054	1	23	317	339

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.095
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C++C+ +F +  +L+ H++ H
  KWMTBOMO07048 144 CDYCSDKFEDFRSLVLHRKLH 164
                    *******************99 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.022
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C+ Cg+s+  +   + H+ tH
  KWMTBOMO07048 205 QCDQCGRSY-PPNYIRIHMLTH 225
                    7********.999******999 PP

  == domain 3  score: 20.9 bits;  conditional E-value: 5.4e-06
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y C++C+k+Fk + +L++H    H
  KWMTBOMO07048 231 YSCKYCPKKFKVPGSLNSHVLWnH 254
                    89*****************98777 PP

  == domain 4  score: 17.8 bits;  conditional E-value: 5.3e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ykC++C+ +F ++s+  +Hir+ H
  KWMTBOMO07048 260 YKCEVCNATFISSSSKSSHIRKnH 283
                    9*********************99 PP

  == domain 5  score: 22.0 bits;  conditional E-value: 2.3e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C+ Cgk+F +ks+L+rH  tH
  KWMTBOMO07048 289 YRCDTCGKRFFSKSELQRHSLTH 311
                    9******************9999 PP

  == domain 6  score: 17.0 bits;  conditional E-value: 9e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C+ C+ks+ +++ L++H+++H
  KWMTBOMO07048 317 FHCHLCDKSYQTRYGLNVHLKSH 339
                    78*******************99 PP