Silkworm Genome Informatics Database

Gene

KWMTBOMO07048

Annotation

putative_Zinc_finger_protein_26_[Danaus_plexippus]

Location

Bomo_Chr12(+):2729795-2732173 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.133

CDS

ATGAGATCCATTAGTTCTTCAATTTCCATAGGAGGACGAGACGTTCAGTTTGCGGAAATATTGCTGAATTTCTATAGCTATCAGGTAACAGAAGATCCCCTACTTTCTGAAAACCTTTGCATCAGCTGTGCTCACCAACTAACCATCACATATTCTTTCAAAGTCCTAATAGAATCAAGCTATAGGAAATTAATAGAAAACTATAATGATTTAAACCATACAAACGATAATTACGAAGCCGTAAGTGAATCTCATGATGAAAATAAAAAAAATTATAACAGAAAAAAGAAAAAATTCAAAACAAAAGTGAAAGTTAAAGAGGAACTCGTAACAATATACTGCGCTGTGTGTAAACAGGAATTTAATTGTATTAAAACATTAAACGAACATTGTACTAATAGTCATCCCACAAAAGGAGCTGGAAGGAGTTGCGATTATTGCAGTGACAAATTTGAAGACTTCAGATCTCTGGTGCTACACAGAAAACTTCACTTGACACCGTTTTTGTGTGAAAACTGTTGGGATGGCTTTCTCAATGAGGAAGAACTAAGTATGCATACCTGCCAGCCGAACAGAGATAAAAGTAAAACTAAAACGGAGAGAGTGTTACGTCAGTGTGACCAATGCGGTAGGTCTTACCCCCCAAATTACATTAGAATCCACATGTTAACCCATGGTAACGAAAGATCGTACAGCTGCAAATACTGCCCCAAGAAGTTCAAAGTTCCGGGAAGTCTCAATTCACACGTATTATGGAATCACAAAAGAACACGAAACTACAAATGTGAAGTTTGCAATGCAACATTTATTTCCTCGAGCTCTAAAAGTTCACACATACGTAAGAATCATTTGAAAGAAAAGAAATATCGATGTGATACATGCGGGAAAAGGTTTTTCTCCAAATCTGAACTGCAGAGGCACTCTTTGACTCATACTGGGGTTAAGAACTTTCATTGTCACTTGTGCGATAAATCATACCAAACTAGATATGGACTGAATGTACATTTGAAATCACACACACAACTTTTTTACTTCAAGCCGAAACACATGACTGAGGAAACTGACAGCCATAAATTTCTTATTTTGTTCAAGGATAGTCACAAAATTTGGAACCAAATAGTCTGTTGA

Protein

MRSISSSISIGGRDVQFAEILLNFYSYQVTEDPLLSENLCISCAHQLTITYSFKVLIESSYRKLIENYNDLNHTNDNYEAVSESHDENKKNYNRKKKKFKTKVKVKEELVTIYCAVCKQEFNCIKTLNEHCTNSHPTKGAGRSCDYCSDKFEDFRSLVLHRKLHLTPFLCENCWDGFLNEEELSMHTCQPNRDKSKTKTERVLRQCDQCGRSYPPNYIRIHMLTHGNERSYSCKYCPKKFKVPGSLNSHVLWNHKRTRNYKCEVCNATFISSSSKSSHIRKNHLKEKKYRCDTCGKRFFSKSELQRHSLTHTGVKNFHCHLCDKSYQTRYGLNVHLKSHTQLFYFKPKHMTEETDSHKFLILFKDSHKIWNQIVC

Uniprot

A0A2H1W6W0 A0A212FIC3 S4PFQ1 A0A194PI04 A0A194QPI8 A0A1E1WA41 + More
B4GQF0 B4IR84

Pubmed

22118469 23622113 26354079 17994087

EMBL

ODYU01006707 SOQ48798.1 AGBW02008401 OWR53475.1 GAIX01003927 JAA88633.1 + More
KQ459603 KPI92947.1 KQ461194 KPJ06890.1 GDQN01007210 JAT83844.1 CH479187 EDW39822.1 CH691504 EDW33263.1

Proteomes

UP000007151 UP000053268 UP000053240 UP000008744

Pfam

PF00096 zf-C2H2 + More
PF07776 zf-AD

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type
IPR012934   Znf_AD

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

A0A2H1W6W0 A0A212FIC3 S4PFQ1 A0A194PI04 A0A194QPI8 A0A1E1WA41 + More
B4GQF0 B4IR84

PDB

5V3M E-value=3.8608e-17, Score=215

KEGG

NA

GO

GO:0008270 GO:0003676 GO:0005634 GO:0046872 GO:0007156 GO:0005515 GO:0004319 GO:0004320 GO:0016295 GO:0016296

Length:

375

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00215

Exp number, first 60 AAs:

0.00215

Total prob of N-in:

0.00964

outside

1 - 375

Pi

250.612671

Theta

154.211872

Tajima's D

-1.374136

CLR

126.864756

CSRT

0.0793460326983651

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics