HMM length of domain: 45 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	36.6	0.0	2.2e-12	2.5e-09	1	38	46	84
2	36.6	0.2	2.3e-12	2.6e-09	2	39	101	138
3	19.8	0.1	4.1e-07	0.00046	2	33	156	187
4	3.6	0.0	0.047	52	31	45	235	250
5	58.2	0.1	4e-19	4.5e-16	1	42	257	299

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 2.2e-12
            HTH  1 tpealaaAleavvnGkmSirkAArkYgiPrsTLw.rrkr 38
                   tp++++ Alea ++  mS+ kA+ ++giP +TLw r+ r
  KWMTBOMO06921 46 TPTDMDNALEALRSHHMSLTKASALFGIPSTTLWqRAHR 84
                   79********************************77766 PP

  == domain 2  score: 36.6 bits;  conditional E-value: 2.3e-12
            HTH   2 pealaaAleavvnGkmSirkAArkYgiPrsTLwrrkrg 39 
                    +++l  Alea + G++S +kA++ YgiP sTL++  r+
  KWMTBOMO06921 101 ETDLKNALEALRAGSISANKASKAYGIPSSTLYKIARR 138
                    899******************************98877 PP

  == domain 3  score: 19.8 bits;  conditional E-value: 4.1e-07
            HTH   2 pealaaAleavvnGkmSirkAArkYgiPrsTL 33 
                    +++l  Al a +  ++S+++AA +YgiP+ T 
  KWMTBOMO06921 156 RTDLRHALGALRARALSVQRAAALYGIPTGTV 187
                    688999999999999**************995 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.047
            HTH  31 sTLw.rrkrgkyslkr 45 
                     TL+ r+kr++++l+r
  KWMTBOMO06921 235 GTLYgRCKREGIELSR 250
                    5***********9987 PP

  == domain 5  score: 58.2 bits;  conditional E-value: 4e-19
            HTH   1 tpealaaAleavvnGkmSirkAArkYgiPrsTLw.rrkrgkys 42 
                    +++a+a+Aleav+ G+mSi++AA +Y+ P+s+L+ r+kr ky+
  KWMTBOMO06921 257 SEDAMAEALEAVRVGQMSINQAAIHYNLPYSSLYgRFKRCKYQ 299
                    59************************************99987 PP