Silkworm Genome Informatics Database

Gene

KWMTBOMO13953

Pre Gene Modal

BGIBMGA011285

Annotation

PREDICTED:_homeobox_protein_SIX6-like_[Amyelois_transitella]

Location

Bomo_Chr23(-):14622993-14624377 View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Nuclear Reliability : 2.969

CDS

ATGGTTGTATGGAGGCTATTAATTGCAGGTTTGCAGGTAATCGATAGAGGTAGGCGGTGGCGGGTCGGACCGAGCGCTGGCGGTGTGCGTGACGGATCATGGCGGAGCGGGGGGGAGCCCTCGTTAAACGCACCCGCCGCGACGCGGCCTGCAGCCATCCGGCCCCCGGGCGACACACGGCCGGGATTGGCCGCCGCGCCGCCCGGCCCGACCCCGTCAGCCAATCCGCTCGCAGTCGACCGCACGCCCACGGAGCGTCCGCGGCCCGCGCTCAGACCGCGCGCGACTCCGCCGCGCACACTCGCACCGATGCGCGGCTCCTGGGACGAGTCCACCACGGCGGCGCTGCACGCGCGCATCCTGGAGGCGCACCGCGGGCCCGCTGCGCCCGACCGCGCCGCCGAGCCCGCCACTTGTACTGAGCCTGCTCCGCCGCTCACCATTAATTCCATCGAGCTGGCCGCGCCGACTCCTCTGCTGCCCTTACCGACGCTGTCTTTCAGCGCCGAACAAGTCGCCACCGTTTGTGAAACCCTGGAGGAGAGCGGCGACGTGGAACGGCTCGCGAGGTTCCTGTGGTCGCTTCCGGTGGCACATCCAAATGTTGCCGAACTGGAGCGCTGCGAGGCTGTCCTGCGAGCCCGAGCGGTGGTCGCCTTCCACGCGGGCCGACACCGCGAGCTCTACTCCATACTGGAGCGCCACCGGTTTCAACGTTCGAGTCATGCGAAGCTGCAAGCCTTATGGTTAGAGGCGCACTACCAGGAGGCCGAGAGACTTCGAGGCCGTCCTCTGGGCCCGGTCGACAAGTACCGCGTCCGCAAGAAGTTCCCTTTGCCTCGGACCATTTGGGACGGAGAACAAAAAACGCACTGTTTCAAGGAGAGAACGCGGTCACTATTGAGGGAGTGGTACCTGCAGGACCCGTACCCGAACCCGACCAAGAAGCGGGAGCTGGCGGCGGCGACGGGCCTCACGCCGACGCAGGTCGGCAACTGGTTCAAGAACCGGCGGCAGCGGGACCGAGCCGCCGCCGCCAAGAACCGCTCGGCGCTGCTCGGCCGGGGCTTCGCCTCCTCCTCCACCTACGACGAGGACTCGGCCGACTCCGAAATCAACGTCGAGGAGGAGTAG

Protein

MVVWRLLIAGLQVIDRGRRWRVGPSAGGVRDGSWRSGGEPSLNAPAATRPAAIRPPGDTRPGLAAAPPGPTPSANPLAVDRTPTERPRPALRPRATPPRTLAPMRGSWDESTTAALHARILEAHRGPAAPDRAAEPATCTEPAPPLTINSIELAAPTPLLPLPTLSFSAEQVATVCETLEESGDVERLARFLWSLPVAHPNVAELERCEAVLRARAVVAFHAGRHRELYSILERHRFQRSSHAKLQALWLEAHYQEAERLRGRPLGPVDKYRVRKKFPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAAATGLTPTQVGNWFKNRRQRDRAAAAKNRSALLGRGFASSSTYDEDSADSEINVEEE

Uniprot

H9JP31 A0A0L7KZJ0 A0A194QHW1 A0A2H1WQ88 C3PPH0 G3K2M9 + More
G3K2M8 L7X1S6 G3K2M7 G3K2M6 G3K2N0 G3K2N1 A0A212FD33

Pubmed

19121390 26227816 26354079 21778360 23674305 22118469 + More

EMBL

BABH01009595 JTDY01004179 KOB68496.1 KQ458761 KPJ05143.1 ODYU01010236 + More
SOQ55213.1 CU681835 CAY54143.1 JN102352 AEO13435.1 JN102351 AEO13434.1 KC469894 AGC92733.1 JN102350 AEO13433.1 JN102349 AEO13432.1 JN102353 AEO13436.1 JN102354 AEO13437.1 AGBW02009117 OWR51623.1

Proteomes

UP000005204 UP000037510 UP000053268 UP000007151

PRIDE

H9JP31

Pfam

PF00046 Homeodomain + More
PF16878 SIX1_SD

Interpro

IPR001356   Homeobox_dom        + More
IPR031701   SIX1_SD
IPR009057   Homeobox-like_sf

SUPFAM

SSF46689 SSF46689

CDD

cd00086 homeodomain

ProteinModelPortal

H9JP31 A0A0L7KZJ0 A0A194QHW1 A0A2H1WQ88 C3PPH0 G3K2M9 + More
G3K2M8 L7X1S6 G3K2M7 G3K2M6 G3K2N0 G3K2N1 A0A212FD33

PDB

4EGC E-value=4.02845e-69, Score=664

KEGG

101742948 K19473 homeobox protein SIX3/6 | (RefSeq) homeobox protein SIX6

GO

GO:0005634 GO:0003677 GO:0004930 GO:0007186 GO:0016021 GO:0004888 GO:0007166 GO:0016020 GO:0004713 GO:0016491 GO:0015930

Subcellular location

Nucleus

Length:

377

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00199

Exp number, first 60 AAs:

0.00016

Total prob of N-in:

0.00378

outside

1 - 377

Pi

216.445506

Theta

186.951226

Tajima's D

0.496454

CLR

0.054918

CSRT

0.513524323783811

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics