HMM length of domain: 55 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	37.5	0.9	4.5e-12	1.6e-09	1	54	290	341
2	-0.5	2.0	3.4	1.2e+03	9	26	347	365

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 4.5e-12
                    CHHHHHHHHHHHHHHHHHHHHHHHHCSCC.CH.TTSS-STHHHHHHHHHHHHHHH CS
           bHLH   1 rRtahnerErrRRdriNdafeeLrellPk.askakskKlsKaeiLekAveYIkqL 54 
                    rR+ hn +Er+RR  +++ f+eL++ +P  +   ++++  K+ iL++A    k+L
  KWMTBOMO06883 290 RRSIHNDMERQRRIGLKNLFDELKMQIPAtR---DKERAPKVVILREAAALCKKL 341
                    7999*************************66...8888**********9887776 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 3.4
                    HH.HHHHHHHHHHHHHHHC CS
           bHLH   9 Er.rRRdriNdafeeLrel 26 
                    Er + R++ N+ +++L++l
  KWMTBOMO06883 347 EReKLRKKQNQLMARLKKL 365
                    543568999*******986 PP