Silkworm Genome Informatics Database

Gene

KWMTBOMO06883

Pre Gene Modal

BGIBMGA012004

Annotation

c-myc_[Bombyx_mori]

Location

Bomo_Chr11(+):18562681-18574133 View in EpiBrowser

Transcription factor

bHLH

Location in the cell

Nuclear Reliability : 4.746

CDS

ATGTCGCCGCCGCTAGACTCCCAACTGCTGCACTTCGACATATGGGAATCTCTGGACGAAGAGTCCATGAGATTGACCCAAACATCAGAGTTCTGGACTCAAGTACAATATGAAGCAGAGAGACTCGACCTCGTTCCGCCTGCGAATCTGTCGGATCATCTACAAGACAGCGACGAAGACTGGAGGATAGAAGAGACGCACGAAGATCCACACAAAGACAACATCGTACATCATGACTGTATGTGGGCAGGTTCGTGTGTAGATTCTGTACATCCGAGCAATAATTTCGTACCCTCAGACCATATACCGGCCACGCCCGGACAGAGTTTGCTCAGAAGAGACATATCACCGTCGAGACCTGACACACCACCCTCGTTAGACGGCGATGAACCACCTCAGTTCCGTCACGCGGTCGACGTCGCTGGAACAGCTCTTCGTTTGCTCAGAGATTCAGCGGCCGTAGCCGCCGATCATTCGTACACTTTGGCGAGACAACACCGGGATTACCTCGGAGTGCAGACACCGTCTGACTCCGGTGAATCAGAGGAGGAAATTGATGTGGTATCTCTCGGAACAACACAGCAGCCATTTGCGCCGACGACTACGACGACACCCAACAATATGCTACGTCCGGAAACGTTGGTTCGTGCTGCTTCAATGCCAGATCGGCGTCAGGCCCAGCGACCGTTAGAATCCGCGACGTCTCGCACGCCCCGCTCGCCGCCCCGCCCGATCGCACGGAAGCGGCTGGTGCCCCCGGCGAGCGTGATGCCGGGCGGCGCGCGACGGAGGGCCCGCGGCCCGGGACGCCGCGGCCGCCGCTCTAACACCGACACGGACTCCGAGGCCGAGTCTCCGGAGATCGAGCGTCGTTCCATACACAACGATATGGAACGACAGAGACGTATCGGCCTCAAAAACCTCTTCGACGAGCTCAAAATGCAGATCCCCGCCACGAGAGACAAGGAACGCGCTCCTAAAGTCGTGATACTCAGAGAGGCGGCCGCACTCTGCAAGAAATTGAGCCAAGAGGATATCGAGCGGGAGAAGTTAAGGAAGAAGCAGAACCAGCTCATGGCGAGATTGAAAAAGCTTCGCAAATCACTTTCGGCTCGCTACCACCCGTACTGA

Protein

MSPPLDSQLLHFDIWESLDEESMRLTQTSEFWTQVQYEAERLDLVPPANLSDHLQDSDEDWRIEETHEDPHKDNIVHHDCMWAGSCVDSVHPSNNFVPSDHIPATPGQSLLRRDISPSRPDTPPSLDGDEPPQFRHAVDVAGTALRLLRDSAAVAADHSYTLARQHRDYLGVQTPSDSGESEEEIDVVSLGTTQQPFAPTTTTTPNNMLRPETLVRAASMPDRRQAQRPLESATSRTPRSPPRPIARKRLVPPASVMPGGARRRARGPGRRGRRSNTDTDSEAESPEIERRSIHNDMERQRRIGLKNLFDELKMQIPATRDKERAPKVVILREAAALCKKLSQEDIEREKLRKKQNQLMARLKKLRKSLSARYHPY

Uniprot

F8WT28 A0A2A4J3M4 X2L5N9 A0A2H1W0D7 A0A194QPL3 A0A3S2L793 + More
A0A1Y1LZW2

Pubmed

19121390 24773378 25038464 26354079 28004739

EMBL

BABH01039767 AB649263 BAK53865.1 NWSH01003442 PCG66288.1 KJ206239 + More
AHN95658.1 ODYU01005584 SOQ46570.1 KQ461185 KPJ07478.1 RSAL01000107 RVE47280.1 GEZM01045080 JAV77930.1

Proteomes

UP000005204 UP000218220 UP000053240 UP000283053

PRIDE

F8WT28

Pfam

PF00010 HLH

Interpro

IPR011598   bHLH_dom        + More
IPR002418   Tscrpt_reg_Myc
IPR036638   HLH_DNA-bd_sf

SUPFAM

SSF47459 SSF47459

Gene 3D

4.10.280.10

CDD

cd00083 HLH

ProteinModelPortal

F8WT28 A0A2A4J3M4 X2L5N9 A0A2H1W0D7 A0A194QPL3 A0A3S2L793 + More
A0A1Y1LZW2

PDB

5I50 E-value=3.4294e-07, Score=130

KEGG

100862782 K04377 Myc proto-oncogene protein | (RefSeq) myc; c-myc

PATHWAY

04310    Wnt signaling pathway - Bombyx mori (domestic silkworm)
04350    TGF-beta signaling pathway - Bombyx mori (domestic silkworm)
04391    Hippo signaling pathway - fly - Bombyx mori (domestic silkworm)

GO

GO:0046983 GO:0005634 GO:0003700 GO:0006355 GO:0022891 GO:0043565 GO:0016567 GO:0016020 GO:0006260

Length:

376

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00098

outside

1 - 376

Pi

3.179918

Theta

15.40114

Tajima's D

-0.836874

CLR

1.383384

CSRT

0.166791660416979

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics