HMM length of domain: 47 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	12.9	0.1	9e-05	0.09	3	47	19	85
2	11.6	0.7	0.00023	0.23	22	47	215	248
3	2.3	0.0	0.18	1.8e+02	11	31	246	272
4	12.0	0.1	0.00017	0.17	3	46	341	403

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9e-05
                   SS-HHHHHHHHHHHHHHTTT................THHHHHHHHS......SS-HHHHHHHHHHHT CS
            MYB  3 kWteeEdelLleaveklGng................nWkkIakelg......gRtakqcrsrwqnyl 47
                   ++t+eE  l+l+++ek+                   +W kI ke++       Rt ++++ +w n++
  KWMTBOMO06559 19 SFTKEEVMLILNLIEKYKDAllnkltssfasrtkeiTWMKITKEFNklnprhIRTMESIKMKWENLK 85
                   79***************977******************************999**********9986 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00023
                    TTHHHHHHHHS........SS-HHHHHHHHHHHT CS
            MYB  22 gnWkkIakelg........gRtakqcrsrwqnyl 47 
                    ++W  Ia++++         Rt++q + +w n++
  KWMTBOMO06559 215 KTWMQIAEMYNkqnkqnriQRTGNQLKTKWENLK 248
                    37*****************************986 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.18
                    HHHHHHHHHTTT......THHHHHHHH CS
            MYB  11 lLleaveklGng......nWkkIakel 31 
                     L++ v+k  +g      +W++I++++
  KWMTBOMO06559 246 NLKKMVKKCRKGskydqhDWDSILDKV 272
                    688999999999999999*****9876 PP

  == domain 4  score: 12.0 bits;  conditional E-value: 0.00017
                    SS-HHHHHHHHHHHHHHTTT..............THHHHHHHHS.....SS-HHHHHHHHHHH CS
            MYB   3 kWteeEdelLleaveklGng..............nWkkIakelg.....gRtakqcrsrwqny 46 
                    k+++ E +lL ++v++  +                W +I k ++     +R+ k+ rs+++n+
  KWMTBOMO06559 341 KFSPHECKLLMQCVKQEKKSmavpnsksnkfkslAWIRITKSYNrlspqKRSTKMLRSKFNNL 403
                    89****************99*****************************************97 PP