HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	20.7	1.1	6.4e-06	0.00039	1	23	235	257
2	26.5	1.5	8.6e-08	5.2e-06	3	23	265	285
3	17.0	0.3	9.5e-05	0.0057	1	23	291	313
4	17.1	1.4	8.9e-05	0.0053	2	23	416	437
5	29.8	1.8	7.9e-09	4.7e-07	1	23	443	465
6	8.2	0.6	0.06	3.6	5	23	475	493
7	15.4	1.1	0.00031	0.018	1	23	499	521
8	9.0	1.1	0.031	1.9	1	23	527	551

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 6.4e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC  Cgk Fk+ks L +H r+H
  KWMTBOMO06455 235 FKCLTCGKDFKQKSTLLQHERIH 257
                    8********************99 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 8.6e-08
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    Cp+Cgk+F+++s+L++H+r+H
  KWMTBOMO06455 265 CPECGKRFRQQSHLTQHLRIH 285
                    ********************9 PP

  == domain 3  score: 17.0 bits;  conditional E-value: 9.5e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C +C++sF+++  L++H+r+H
  KWMTBOMO06455 291 YACVYCPRSFRQRAILNQHLRIH 313
                    88********************9 PP

  == domain 4  score: 17.1 bits;  conditional E-value: 8.9e-05
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +Cp+C k Fk+ks L +H ++H
  KWMTBOMO06455 416 RCPICQKEFKQKSTLLQHGCIH 437
                    7*****************9888 PP

  == domain 5  score: 29.8 bits;  conditional E-value: 7.9e-09
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+Cp+Cgk+F+++s+L++H+r+H
  KWMTBOMO06455 443 YPCPECGKRFRQQSHLTQHLRIH 465
                    99********************9 PP

  == domain 6  score: 8.2 bits;  conditional E-value: 0.06
                    TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   5 dCgksFkrksnLkrHirtH 23 
                    +C++ F+++  L++H+r+H
  KWMTBOMO06455 475 YCPRFFRQRTILNQHLRIH 493
                    9*****************9 PP

  == domain 7  score: 15.4 bits;  conditional E-value: 0.00031
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykC+ Cgk F++k  L +H rtH
  KWMTBOMO06455 499 YKCTQCGKDFRQKAILDQHTRTH 521
                    9*********************9 PP

  == domain 8  score: 9.0 bits;  conditional E-value: 0.031
                    EEET..TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                    + Cp   C ++F +  + k+Hi  H
  KWMTBOMO06455 527 FCCPmpNCRRRFATEPEVKKHIDNH 551
                    789999****************988 PP