HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	11.0	0.9	0.0072	0.43	1	23	160	183
2	4.0	1.2	1.2	74	1	23	191	213
3	12.9	0.2	0.0019	0.12	1	23	247	270
4	10.7	0.9	0.009	0.54	2	21	275	294
5	13.3	0.9	0.0014	0.083	2	23	311	332
6	15.6	0.3	0.00026	0.015	1	23	337	359
7	14.3	2.9	0.00065	0.039	1	22	368	389
8	9.9	1.8	0.017	1	1	23	401	424
9	13.4	0.3	0.0013	0.077	1	23	430	453
10	10.0	0.1	0.016	0.94	3	19	466	482
11	10.7	1.4	0.0094	0.56	1	23	496	519

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0072
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ykC+dC   F++  +++ H+   H
  KWMTBOMO06288 160 YKCSDCLIGFNTARLMCDHMEGkH 183
                    9*******************8777 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 1.2
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC++C+    +k+nL  H++ H
  KWMTBOMO06288 191 HKCDVCNVYLLTKDNLLLHRSLH 213
                    79*****9888********9999 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 0.0019
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C++Cg  F +ks L+ H    H
  KWMTBOMO06288 247 YVCSICGSEFGTKSKLNYHKAAwH 270
                    9******************87655 PP

  == domain 4  score: 10.7 bits;  conditional E-value: 0.009
                    EETTTTEEESSHHHHHHHHH CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHir 21 
                    +C+ Cgk+F +k  Lk H+r
  KWMTBOMO06288 275 QCDCCGKVFASKMTLKYHLR 294
                    5778**************99 PP

  == domain 5  score: 13.3 bits;  conditional E-value: 0.0014
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C++C+k+F +k ++++H  +H
  KWMTBOMO06288 311 PCKGCSKVFHSKKSYRAHAVVH 332
                    6*****************8877 PP

  == domain 6  score: 15.6 bits;  conditional E-value: 0.00026
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+Cp+Cgk F  k nL rH r H
  KWMTBOMO06288 337 YPCPICGKLFQWKRNLARHTRNH 359
                    99*******************99 PP

  == domain 7  score: 14.3 bits;  conditional E-value: 0.00065
                    EEETTTTEEESSHHHHHHHHHC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt 22 
                    y+C +C+k+F +++ + +H+r 
  KWMTBOMO06288 368 YECRECNKTFASRDCYANHLRL 389
                    99******************95 PP

  == domain 8  score: 9.9 bits;  conditional E-value: 0.017
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C+ Cgk+F +k  ++ H    H
  KWMTBOMO06288 401 HECSFCGKKFATKWCMVDHVDWeH 424
                    78*************999986655 PP

  == domain 9  score: 13.4 bits;  conditional E-value: 0.0013
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C++C k Fk++  L++H +  H
  KWMTBOMO06288 430 YQCSVCFKAFKTSKILVAHVNNiH 453
                    9******************99888 PP

  == domain 10  score: 10.0 bits;  conditional E-value: 0.016
                    ETTTTEEESSHHHHHHH CS
        zf-C2H2   3 CpdCgksFkrksnLkrH 19 
                    C++Cgks+k+   Lk H
  KWMTBOMO06288 466 CDICGKSYKTEKRLKGH 482
                    **********9999988 PP

  == domain 11  score: 10.7 bits;  conditional E-value: 0.0094
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    +kC+ C+ +F+ + +  +H+++ H
  KWMTBOMO06288 496 FKCKLCPATFTWQTSIYKHMKMmH 519
                    8********************999 PP