HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	12.7	3.8	0.0022	0.13	1	23	514	536
2	10.0	0.8	0.016	0.96	1	23	554	577
3	11.3	0.7	0.006	0.36	2	23	584	605
4	12.5	1.6	0.0024	0.15	2	20	613	631
5	12.6	7.3	0.0022	0.13	2	23	645	666
6	18.7	0.1	2.8e-05	0.0017	1	23	671	693

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.0022
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++C k +++k  Lk H+r+H
  KWMTBOMO06276 514 FQCHICRKWYSTKVTLKIHRRSH 536
                    89********************9 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.016
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C+ C+++F+r++ L  H    H
  KWMTBOMO06276 554 YECDCCNETFNRREKLWEHKAEaH 577
                    89999**************98777 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 0.006
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C++C k+F + s+L +H rtH
  KWMTBOMO06276 584 RCEVCRKCFEDDSELAAHDRTH 605
                    7*****************8888 PP

  == domain 4  score: 12.5 bits;  conditional E-value: 0.0024
                    EETTTTEEESSHHHHHHHH CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHi 20 
                    +C++Cg +F r ++L+rH+
  KWMTBOMO06276 613 RCGECGATFQRYEQLRRHR 631
                    7*****************7 PP

  == domain 5  score: 12.6 bits;  conditional E-value: 0.0022
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                     C  Cgk+F++ ++L+rH+  H
  KWMTBOMO06276 645 ACAQCGKRFSHAHSLTRHLHNH 666
                    6******************998 PP

  == domain 6  score: 18.7 bits;  conditional E-value: 2.8e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C +C+ sF r ++L +H+++H
  KWMTBOMO06276 671 YRCVVCKASFARADQLAQHLNSH 693
                    9********************99 PP