HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	1.4	0.6	8.4	5e+02	1	16	51	72
2	4.5	0.2	0.84	50	1	23	202	224
3	11.1	1.1	0.0067	0.4	1	23	231	253
4	10.8	1.1	0.0088	0.53	1	20	257	276
5	15.7	1.9	0.00025	0.015	1	23	281	303
6	19.2	0.4	1.9e-05	0.0011	1	23	309	332
7	13.7	1.1	0.001	0.062	1	21	337	357
8	19.3	0.0	1.8e-05	0.0011	1	23	370	393
9	10.5	1.4	0.011	0.64	2	20	400	418
10	23.3	0.9	9.4e-07	5.6e-05	2	23	430	451
11	7.0	0.1	0.13	8.1	5	23	460	479

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 8.4
                   EEETTTT......EEESSHHHH CS
        zf-C2H2  1 ykCpdCg......ksFkrksnL 16
                   y C++C+       +F r+ +L
  KWMTBOMO06250 51 YLCKYCKwkidklLRFIRQCHL 72
                   66****9777766677777666 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.84
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykC +C k F+  + L+ Hi +H
  KWMTBOMO06250 202 YKCVKCVKWFNFEDVLNGHIERH 224
                    9*******************999 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.0067
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+ C + +++  +L+ Hi++H
  KWMTBOMO06250 231 FQCDMCQQYCPSAVSLRGHIKSH 253
                    89********************9 PP

  == domain 4  score: 10.8 bits;  conditional E-value: 0.0088
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHi 20 
                    ykC++Cgk+   + + k+H+
  KWMTBOMO06250 257 YKCKVCGKRTVMQRHVKTHL 276
                    9*****************96 PP

  == domain 5  score: 15.7 bits;  conditional E-value: 0.00025
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C+ Cgk Fk+ ++L++H  +H
  KWMTBOMO06250 281 HACHQCGKLFKTIDSLRVHAVRH 303
                    56*****************9988 PP

  == domain 6  score: 19.2 bits;  conditional E-value: 1.9e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C++C k F  +s+L +H +  H
  KWMTBOMO06250 309 YQCSECEKAFIYPSLLHKHVQAvH 332
                    9******************98777 PP

  == domain 7  score: 13.7 bits;  conditional E-value: 0.001
                    EEETTTTEEESSHHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHir 21 
                    y+C +C+ +Fk+++ L+ H +
  KWMTBOMO06250 337 YYCVECDVKFKSPETLRLHFK 357
                    89*****************77 PP

  == domain 8  score: 19.3 bits;  conditional E-value: 1.8e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+Cp C+ +F ++s L +H++  H
  KWMTBOMO06250 370 YQCPNCDARFVSPSALAVHLSAqH 393
                    9******************99777 PP

  == domain 9  score: 10.5 bits;  conditional E-value: 0.011
                    EETTTTEEESSHHHHHHHH CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHi 20 
                     C+ C++++++++ L++H 
  KWMTBOMO06250 400 ACDLCHRRYSSREALRAHV 418
                    6*****************5 PP

  == domain 10  score: 23.3 bits;  conditional E-value: 9.4e-07
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C++C ksF+rks Lk H+rtH
  KWMTBOMO06250 430 TCDICEKSFSRKSVLKLHLRTH 451
                    7********************9 PP

  == domain 11  score: 7.0 bits;  conditional E-value: 0.13
                    TTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   5 dCgksFkrksnLkrHirt.H 23 
                    +Cg  F +k  Lk+H    H
  KWMTBOMO06250 460 ECGAAFAQKATLKAHAAAkH 479
                    7**************87656 PP