Gene

KWMTBOMO07843

Pre Gene Modal

BGIBMGA001211

Annotation

PREDICTED:_sterol_regulatory_element-binding_protein_2_[Amyelois_transitella]

Location

Bomo_Chr13(-):8136521-8140482      View in EpiBrowser

Transcription factor

bHLH

Location in the cell

Nuclear   Reliability : 3.025

CDS

ATGGATATTGATCCTTTTATGAATGCGGACGTTTTCAATGTCCACGACATTGCAGAAATTGAAGATTTTTTAAATAATTGCGATGGGGATTTTATGACAAAATTAGAACAGGAACTTACTTTTGTGGACAATACAAATGAAACAGGGCTGTTGGACATTGATACGAAATGCAAGCCTGAAATTTCATCATCTCCACAAGTTTCGCCGAATTATAATCATACCGGGAATCCAGTGATGTCACAGCACACGCATAGAATTAGGCCAACGCCCCCGATCAGTAAAACAATACAAGGTGGATATATTAAAGAAGAGAAATTCAATTTGCCAACATCCCTTGAGAATGCGTCCGTGACGTTTCCTGAAGTTATACCACAACAGAGGACTCAAGTTCAAAATCAGCCGATGATTTTTCAACAAGTAGTACAGAGCCCCGTGTTTGTTAATTTGGGTCCGGCTGGAAATATCCAACCTATGCCTGACAAAAGGTCAAATGTCATTCAAGTTGATAATGTTCCACAAGTAAATAAAACTAGCCCCCTAAAACAGCAGAGTCAACCTCTACTGATACAAAACAATCCCAAAGGTGTACCTTTTATATTAAAAAGTTCTGATTCTAATTTCTCACCAGTGTTATTGCAGTCGAATATCATTAACCCAAAGACACAAACGTTGATGTATACCAGTACTCCATTACAGGTTTCGAGCACAAACCAAAATATTATTACAAATGCAAAGGCAGGATCGGAGACAACACCCATACACACATTTTTTACAAACAGTAACGGTACTACTTTATTGACGGGAATACCTGCAGTTGTACTAGAAGGTGATAAAATTGCTTTAAACCCTGCACCAAACATTGGACCTCCAAAAGTGAAAGAAGTGAAACGCAGTGCTCACAATGCCATTGAAAGACGTTACAGAACTAGTATTAATGATAGAATAGTGGAATTGAAGAATATGCTTGTTGGTGAAGAGGCCAAGTTGAACAAGTCAGCAATATTGCGTAAAACAATTGAGTACATTAAGTATTTGCGAAGTCAGAACACTAGGTTAAAACAAGAAAATATAGCTCTTAAACAGGTTTGTCAAAAGTCTGGAGTTAAAGAGCCAATATTTGAAGGAGGTTATACTCCACCACACAGTGATGTGTCATCACCTTATCATTCTCCACATTCAATTGACAGCGACACACCTTCTTCACCAGAATACAAGACTGAAGATAAATACTCAAAGATAGTAATGGGTATGGGTGATCATTCACGACTGGCGTTATGTGCCTTCATGGTTGGGCTTATTGCTTTCAACCCATTTAGCACATTCTTTAGCAGTTTTACAACAGAGTATACAACTACAGATTTCAATGCAAGAATTGATCAAAGAAAAATTCTATCAGAAGATGATTCAAGTTATGAAGGATCATCTTGGGCGATTTGCGTTTTTAATACATTCTTTATATATCTTGTTAACTTTGTAATACTCGGAGGCTGTTTGGTAAAGTTACTAGTTTATGGAGATTCTGTACCAAAAAGTCAGTCCAAGGAAGCTGGTTTATTCTACAAACATAAAAGGCTTGCTGGCAACCATCTTAAAAAGGGCGATCTAAATAATACGCGACTAGAACTCCATCGAGCATTGGAAGCATGTGGAAGAAGTGTCCAGGCAGGTGGCCCAGGTCAAGCTAAGTACACGGCCCTCACAGCGGCTGTGCTTCGGCAGTTGCTGCAGAGATTACCGTTCGGTGGCTTCCTTGCACGACGCGCCGGAGATCTGTGGAGGGACAGTCCAACAAGACGAGCTACGTTGCACTGGGCAACGGAGGTTTCTTCTGTTTCGCATCAACTAGCCCAGCTGGAGATCCTGTCGGATCACAGAGGGCGCAGCGAACGATTGTTGCTAGCGCTCCAAGCGATTAATTTGGCTGAGGTCGCCGGGAACAGACAATTACTGGCCGACACGTACGTCACGGCGGCTTTAGTCTTTAAAGATTATATGCCTAAGATCGGAAACTGGTTGTGCGGGTAA

Protein

MDIDPFMNADVFNVHDIAEIEDFLNNCDGDFMTKLEQELTFVDNTNETGLLDIDTKCKPEISSSPQVSPNYNHTGNPVMSQHTHRIRPTPPISKTIQGGYIKEEKFNLPTSLENASVTFPEVIPQQRTQVQNQPMIFQQVVQSPVFVNLGPAGNIQPMPDKRSNVIQVDNVPQVNKTSPLKQQSQPLLIQNNPKGVPFILKSSDSNFSPVLLQSNIINPKTQTLMYTSTPLQVSSTNQNIITNAKAGSETTPIHTFFTNSNGTTLLTGIPAVVLEGDKIALNPAPNIGPPKVKEVKRSAHNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQNTRLKQENIALKQVCQKSGVKEPIFEGGYTPPHSDVSSPYHSPHSIDSDTPSSPEYKTEDKYSKIVMGMGDHSRLALCAFMVGLIAFNPFSTFFSSFTTEYTTTDFNARIDQRKILSEDDSSYEGSSWAICVFNTFFIYLVNFVILGGCLVKLLVYGDSVPKSQSKEAGLFYKHKRLAGNHLKKGDLNNTRLELHRALEACGRSVQAGGPGQAKYTALTAAVLRQLLQRLPFGGFLARRAGDLWRDSPTRRATLHWATEVSSVSHQLAQLEILSDHRGRSERLLLALQAINLAEVAGNRQLLADTYVTAALVFKDYMPKIGNWLCG

Uniprot

H9IVD1   A0A2H1VIL4   A0A2A4JTI6   A0A212ELX8   A0A194Q9A4   A0A194RLQ1   + More
A0A1E1WVK0   A0A1Y1MFB5   A0A067QQZ3   A0A1B6EGK4   A0A1W4WSR3   A0A0F7IKE5   D2A113   A0A2J7RQE5   A0A1J1IHR2   A0A0N0BGW5   A0A1B6H6H1   A0A1B6MLF2   F1RDU4   E2BFH0   A0A1B6G2C4   A0A0M4B676   A0A310SBQ8   E0VES1   A0A2D0PPZ9   A0A2D0PSM2   H2M0A8   A0A154NX90   A6XLD8   A0A3P9J025   A0A3P9MGE9   A0A0L7RK29   A0A146MVA7   A0A1U8D5I7   A0A182YCN2   U4U7N4   A0A026W4I3   A0A146QFT9   A0A1S4FQK8   A0A3Q3BNN1   A0A023EWQ7   A0A154MDH6   A0A151P4D4   A0A182QXP7   A0A0B8RP38   F6U0V4   A0A146TLU8   A0A3Q2Q7A3   N6U3G2   A0A2R3ZDF3   A0A3Q2Q6F8   A0A146W0U6   A0A182G9E1   A0A0A7KZK1   A0A146S9A0   A0A084VJ23   A0A3L8D502   A0A385MCM3   Q4S875   A0A2A3EGT0   V9IIG4   A0A3Q3NEP2   M9NGV6   A0A3B4TXF1   A0A3Q3NEN1   A0A3P8WHT0   A0A3B3C136   A0A3P8WBW5   A0A3B4ZZL6   A0A3B4TY15   A0A3Q3T2K7   A0A182RZ29   A0A1L1RPI1   A0A1W7RJ46   A0A226PTJ5   A0A3Q0GKX1   A0A3B4E3Z7   A0A3B4Z7I8   B0XGW8   R4GLV5   A0A3Q4GFF9   Q90ZM5   A0A2I4BRI0   A0A1L8EYS0   A0A151P412   A0A151P404   A0A151P3Y7   A0A182T7F5   J3SDG9   A0A3Q4MA31   A0A3B5A967  

Pubmed

19121390    22118469    26354079    28004739    24845553    18362917    + More
19820115    23594743    20798317    20566863    17554307    25244985    23537049    24508170    17510324    24945155    22293439    25476704    20431018    26483478    24438588    30249741    15496914    24487278    29451363    15592404    26358130    24621616    25186727    11907029    27762356    23025625   

EMBL

BABH01000899    BABH01000900    BABH01000901    BABH01000902    ODYU01002774    SOQ40679.1    + More
NWSH01000642    PCG75086.1    AGBW02013971    OWR42483.1    KQ459299    KPJ01999.1    KQ460205    KPJ16911.1    GDQN01000052    JAT91002.1    GEZM01036620    JAV82566.1    KK853125    KDR11017.1    GEDC01000249    JAS37049.1    KP147920    AKG92757.1    KQ971338    EFA01599.1    NEVH01001340    PNF43047.1    CVRI01000053    CRK99799.1    KQ435771    KOX75141.1    GECU01037409    JAS70297.1    GEBQ01003233    JAT36744.1    FQ312026    GL448037    EFN85492.1    GECZ01013238    JAS56531.1    KR020013    ALB38958.1    KQ797156    OAD46986.1    DS235096    EEB11877.1    KQ434777    KZC04213.1    DQ836065    ABI33876.1    KQ414578    KOC71163.1    GCES01162754    JAQ23568.1    KB632144    ERL89082.1    KK107429    EZA50933.1    GCES01131263    JAQ55059.1    GAPW01000050    JAC13548.1    GCES01117546    GCES01063065    GCES01063064    JAR23259.1    AKHW03001118    KYO43789.1    AXCN02001227    GBSH01002607    JAG66419.1    AAMC01050816    AAMC01050817    AAMC01050818    GCES01092552    JAQ93770.1    APGK01041124    APGK01041125    KB740989    ENN76105.1    MG735210    AVR48442.1    GCES01063060    JAR23263.1    JXUM01050239    KQ561640    KXJ77916.1    KJ162572    AIZ50708.1    GCES01109194    JAQ77128.1    ATLV01013426    KE524855    KFB37967.1    QOIP01000014    RLU14928.1    MH633449    AYA57965.1    CAAE01014707    CAG03157.1    KZ288253    PBC30975.1    JR049085    AEY60855.1    JF502069    KU670831    AFH35105.1    ANN45572.1    AADN05000376    GDAY02000262    JAV51151.1    AWGT02000022    OXB82802.1    DS233070    EDS27855.1    AY029224    AAK50343.1    CM004482    OCT64473.1    KYO43788.1    KYO43786.1    KYO43787.1    JU176137    AFJ51660.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000053240    UP000027135    + More
UP000192223    UP000007266    UP000235965    UP000183832    UP000053105    UP000000437    UP000008237    UP000009046    UP000221080    UP000001038    UP000076502    UP000265200    UP000265180    UP000053825    UP000189705    UP000076408    UP000030742    UP000053097    UP000264800    UP000050525    UP000075886    UP000008143    UP000265000    UP000019118    UP000069940    UP000249989    UP000030765    UP000279307    UP000242457    UP000261640    UP000261420    UP000265120    UP000261560    UP000261400    UP000075900    UP000000539    UP000198419    UP000261440    UP000261360    UP000002320    UP000261580    UP000192220    UP000186698    UP000075901   

PRIDE

H9IVD1    Q90ZM5   

Pfam

PF00010   HLH        + More
PF04104   DNA_primase_lrg

Interpro

IPR036638   HLH_DNA-bd_sf        + More
IPR011598   bHLH_dom       
IPR016558   DNA_primase_lsu_euk       
IPR007238   DNA_primase_lsu_euk/arc       

SUPFAM

SSF47459   SSF47459       

Gene 3D

4.10.280.10    

CDD

cd00083  HLH
cd07322  PriL_PriS_Eukaryotic

ProteinModelPortal

H9IVD1   A0A2H1VIL4   A0A2A4JTI6   A0A212ELX8   A0A194Q9A4   A0A194RLQ1   + More
A0A1E1WVK0   A0A1Y1MFB5   A0A067QQZ3   A0A1B6EGK4   A0A1W4WSR3   A0A0F7IKE5   D2A113   A0A2J7RQE5   A0A1J1IHR2   A0A0N0BGW5   A0A1B6H6H1   A0A1B6MLF2   F1RDU4   E2BFH0   A0A1B6G2C4   A0A0M4B676   A0A310SBQ8   E0VES1   A0A2D0PPZ9   A0A2D0PSM2   H2M0A8   A0A154NX90   A6XLD8   A0A3P9J025   A0A3P9MGE9   A0A0L7RK29   A0A146MVA7   A0A1U8D5I7   A0A182YCN2   U4U7N4   A0A026W4I3   A0A146QFT9   A0A1S4FQK8   A0A3Q3BNN1   A0A023EWQ7   A0A154MDH6   A0A151P4D4   A0A182QXP7   A0A0B8RP38   F6U0V4   A0A146TLU8   A0A3Q2Q7A3   N6U3G2   A0A2R3ZDF3   A0A3Q2Q6F8   A0A146W0U6   A0A182G9E1   A0A0A7KZK1   A0A146S9A0   A0A084VJ23   A0A3L8D502   A0A385MCM3   Q4S875   A0A2A3EGT0   V9IIG4   A0A3Q3NEP2   M9NGV6   A0A3B4TXF1   A0A3Q3NEN1   A0A3P8WHT0   A0A3B3C136   A0A3P8WBW5   A0A3B4ZZL6   A0A3B4TY15   A0A3Q3T2K7   A0A182RZ29   A0A1L1RPI1   A0A1W7RJ46   A0A226PTJ5   A0A3Q0GKX1   A0A3B4E3Z7   A0A3B4Z7I8   B0XGW8   R4GLV5   A0A3Q4GFF9   Q90ZM5   A0A2I4BRI0   A0A1L8EYS0   A0A151P412   A0A151P404   A0A151P3Y7   A0A182T7F5   J3SDG9   A0A3Q4MA31   A0A3B5A967  

PDB

1AM9     E-value=1.11398e-20,     Score=249

KEGG

101743180    K07197 sterol regulatory element-binding transcription factor 1 | (RefSeq) sterol regulatory element

GO

GO:0016021   GO:0046983   GO:0006355   GO:1990798   GO:0031018   GO:0003323   GO:0001889   GO:0003896   GO:0003677   GO:0019901   GO:0005737   GO:0004879   GO:0005634   GO:0031065   GO:0032810   GO:0007623   GO:0009416   GO:0045444   GO:0003062   GO:0046676   GO:0008610   GO:0045542   GO:0042789   GO:1903146   GO:0019217   GO:0006351   GO:0000122   GO:0010867   GO:0008286   GO:0009749   GO:0016020   GO:0003682   GO:0045944   GO:0031647   GO:0009267   GO:1903214   GO:0009052   GO:0043565   GO:0005506   GO:0030145   GO:0050906   GO:0005515   GO:0016818   GO:0003707   GO:0051537  

Length:

674

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

43.9670100000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.29579

outside

1  -  422

TMhelix

423  -  445

inside

446  -  482

TMhelix

483  -  505

outside

506  -  674

 

 

Pi

275.104272

Theta

232.060315

Tajima's D

0.631979

CLR

0.000089

CSRT

0.556422178891055

Interpretation

Uncertain