HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	2.8	3.9	3.1	1.9e+02	3	20	139	156
2	12.5	1.3	0.0025	0.15	2	23	165	186
3	5.3	3.1	0.5	30	1	23	207	228
4	17.6	0.5	6e-05	0.0036	3	23	278	298
5	17.3	0.4	7.4e-05	0.0044	2	23	317	338
6	24.2	1.7	4.7e-07	2.8e-05	1	23	344	366
7	21.0	0.6	5.1e-06	0.00031	1	23	371	393
8	6.8	3.3	0.16	9.8	2	23	399	420
9	3.8	0.3	1.4	87	3	19	429	445
10	9.2	0.6	0.029	1.7	3	23	459	480

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 3.1
                    ETTTTEEESSHHHHHHHH CS
        zf-C2H2   3 CpdCgksFkrksnLkrHi 20 
                    C++C+k + + + +  H+
  KWMTBOMO06241 139 CTKCDKEYDSLYKYLEHL 156
                    *************99997 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.0025
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +Cp C k+F r   L+ H ++H
  KWMTBOMO06241 165 TCPQCLKTFERTTKLMWHFKIH 186
                    7******************999 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.5
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C +C+k   +k+++  H  +H
  KWMTBOMO06241 207 FRCRHCKKIV-TKDDFFEHWERH 228
                    89********.********9998 PP

  == domain 4  score: 17.6 bits;  conditional E-value: 6e-05
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C +C+++F+r+s+ krH+  H
  KWMTBOMO06241 278 CVVCKRTFNRQSDVKRHLVEH 298
                    9****************9887 PP

  == domain 5  score: 17.3 bits;  conditional E-value: 7.4e-05
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C +C++ F   s++k+H+r H
  KWMTBOMO06241 317 RCQICSEAFDKASSYKSHLREH 338
                    8*******************99 PP

  == domain 6  score: 24.2 bits;  conditional E-value: 4.7e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C+ C+++F+++sn+++H ++H
  KWMTBOMO06241 344 YTCELCDRVFSDSSNFTKHKKVH 366
                    9********************99 PP

  == domain 7  score: 21.0 bits;  conditional E-value: 5.1e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++C+k+F +   L++H+ +H
  KWMTBOMO06241 371 YRCEICNKKFQTLPYLEKHMEIH 393
                    9*******************999 PP

  == domain 8  score: 6.8 bits;  conditional E-value: 0.16
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    kCp C+ +  ++s+ +rHir+H
  KWMTBOMO06241 399 KCPCCPVMSYTPSLNRRHIRMH 420
                    7999**8888***********6 PP

  == domain 9  score: 3.8 bits;  conditional E-value: 1.4
                    ETTTTEEESSHHHHHHH CS
        zf-C2H2   3 CpdCgksFkrksnLkrH 19 
                    Cp+C+++F +  +   H
  KWMTBOMO06241 429 CPICSERFHTLKMKWDH 445
                    ********998877666 PP

  == domain 10  score: 9.2 bits;  conditional E-value: 0.029
                    ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                    C+ Cg s++   +Lk H++  H
  KWMTBOMO06241 459 CNLCGSSYRKFKDLKDHYKDvH 480
                    *****************99877 PP