Gene

KWMTBOMO06241

Pre Gene Modal

BGIBMGA001804

Annotation

PREDICTED:_zinc_finger_protein_Xfin-like_[Bombyx_mori]

Location

Bomo_Chr11(+):3164095-3171369      View in EpiBrowser

Full name

Zinc finger protein      

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 4.631

CDS

ATGCCGTTTGAAGTGATTGATGAATTCGAGGATGATGCAAACGTCAATGATGATATGGCAACACCACAACGCGACGAGGGAATGTCAGTTGAATCGAGTATCAGTGACGTTGACAAAATCAAAATCGAAGCGACTACATCTATACAAGACATCAAGAAGGAGATCGTGGAAGAAGACCTCCAGGTGGAGATGGATTACAACGAGTTCAGCGTAGTCAAATTGGAGTATGAGGATCTGATAGAGCGGAAAGAGAACTCACCGAGTGAGCTCGCGATTACAGCCGAGGAGAACTCCTCAGATTCGAGCCTAGACGAGGAGATAGAGTACGCTGAAGTCGAGGATCTACTCAACGTGAAGAGGAAACGTCACGAGACCAGAGGCCGGAAGCCAGCCGTCCAAATCGAGCCGCATCTCTGCACGAAATGCGACAAAGAGTACGACAGTCTCTACAAATATCTAGAGCACCTCACCTGTCACGACCTCAAGGCTAACACCTGTCCGCAGTGTCTCAAGACATTCGAGAGGACAACGAAGCTGATGTGGCACTTCAAGATCCACATCAACCAAACGTTCCTGAAGATCAAGTTCCTCAAGACCGAGGAAAAAGCCGGTAAGATATTCCGGTGTAGACATTGCAAGAAGATCGTGACGAAGGATGATTTCTTTGAACATTGGGAGAGGCACTACGCTTTGATGGACTGGAAGAGCCAAAAAAAAATGGACGTTGTCATTGTCAATACGGACAAGAATAACAAGAATCTCTCGGAAACTATGATGAAAAATATTATAGATTACATACTGGGCGATCCGAAGTTCAAGCGCCAAAAGATTTGCGTCGTCTGCAAGAGGACCTTCAACCGGCAGAGCGACGTCAAGCGCCACCTGGTGGAGCACCTGCTCAAGGACGCGCAGGTCAACGGCGAGAGGAGCTTCTTCAACTGGTCGTTGAGATGTCAAATATGTTCGGAGGCCTTCGACAAGGCGAGCTCGTACAAGAGCCACCTGCGGGAGCACGCGTCGCTGCCGATATACACGTGCGAGCTGTGCGACCGCGTCTTCAGCGACTCGAGCAACTTCACCAAGCACAAGAAGGTCCACAACCTGCAGAACTACAGATGCGAGATATGCAACAAAAAATTTCAGACCCTGCCGTATCTCGAGAAGCACATGGAGATACACAAAGAGAAGCCAATTAAATGTCCCTGTTGCCCGGTGATGTCGTACACTCCGTCCTTAAACAGGAGACACATCAGGATGCATCACGTAAAGGGCACAAAAACGCTGTGTCCTATTTGTTCGGAGCGATTCCACACACTCAAAATGAAATGGGACCATCTGTGGCAAGTCCATAAATTGAGGAAGGAGAAATGGGATTGTAACCTGTGCGGGTCCAGCTACAGGAAATTCAAAGACCTGAAGGACCATTACAAAGATGTGCACCGCAAGAAATACTTGAAGCTCATGTCTGGGAATAAGAAGGATAAGATAAAGAAGTTGCTATTGCAAGCTAACGTGACGGTTAAAAGTGAACCTGCAGAAGAATCTAATGAAATGGTGGACATAATAAACTAG

Protein

MPFEVIDEFEDDANVNDDMATPQRDEGMSVESSISDVDKIKIEATTSIQDIKKEIVEEDLQVEMDYNEFSVVKLEYEDLIERKENSPSELAITAEENSSDSSLDEEIEYAEVEDLLNVKRKRHETRGRKPAVQIEPHLCTKCDKEYDSLYKYLEHLTCHDLKANTCPQCLKTFERTTKLMWHFKIHINQTFLKIKFLKTEEKAGKIFRCRHCKKIVTKDDFFEHWERHYALMDWKSQKKMDVVIVNTDKNNKNLSETMMKNIIDYILGDPKFKRQKICVVCKRTFNRQSDVKRHLVEHLLKDAQVNGERSFFNWSLRCQICSEAFDKASSYKSHLREHASLPIYTCELCDRVFSDSSNFTKHKKVHNLQNYRCEICNKKFQTLPYLEKHMEIHKEKPIKCPCCPVMSYTPSLNRRHIRMHHVKGTKTLCPICSERFHTLKMKWDHLWQVHKLRKEKWDCNLCGSSYRKFKDLKDHYKDVHRKKYLKLMSGNKKDKIKKLLLQANVTVKSEPAEESNEMVDIIN

Uniprot

H9IX21   A0A1E1WGP5   A0A212FHL8   A0A194PD98   A0A0N1PH50   H9JFI5   + More
C3Y9E0   R7UVQ0   A0A2P6K8E7   C3Z1X1   A0A2A3EM08   A0A087ZWB3   A0A0L8HK47   A0A2P6K206   C3ZDP1   G3Q4S1   A0A1J1IX89   A0A0J7KTL3   A0A310SCH0   A0A3Q3CHJ2   A0A3B3CDV0   A0A1B0CNP4   A0A096NWM6   C3ZDN5   A0A0A0MVX4   A0A0D9QY77   A0A0L8HF38   C3ZDK9   A0A2K5KZY7   A0A2K5L016   A0A2K5L000   F7DM01   A0A2K6RR15   A0A2K6D817   A0A2K5HZL5   A0A2K5TNZ2   A0A2K5KZX5   A0A286XUX4  

EC Number

2.1.1.-

Pubmed

19121390    22118469    26354079    18563158    23254933    29451363    + More
17431167    25362486    21993624   

EMBL

BABH01021250    BABH01021251    BABH01021252    BABH01021253    GDQN01004884    JAT86170.1    + More
AGBW02008493    OWR53228.1    KQ459606    KPI90983.1    KQ460326    KPJ15679.1    BABH01035044    GG666492    EEN63196.1    AMQN01006879    KB299425    ELU08022.1    MWRG01020828    PRD22603.1    GG666573    EEN53488.1    KZ288215    PBC32534.1    KQ418039    KOF89135.1    MWRG01040752    PRD20343.1    GG666612    EEN48847.1    CVRI01000063    CRL04767.1    LBMM01003238    KMQ93772.1    KQ769068    OAD52973.1    AJWK01020587    AJWK01020588    AJWK01020589    AJWK01020590    AHZZ02013870    AHZZ02013871    AHZZ02013872    AHZZ02013873    AHZZ02013874    AHZZ02013875    AHZZ02013876    AHZZ02013877    AHZZ02013878    EEN48841.1    AQIB01152106    AQIB01152107    KQ418338    KOF87704.1    EEN48815.1    JSUE03021270    JSUE03021271    JSUE03021272    JSUE03021273    JSUE03021274    JSUE03021275    JSUE03021276    JSUE03021277    JSUE03021278    JSUE03021279    AQIA01035001    AQIA01035002    AAKN02042182   

Proteomes

UP000005204    UP000007151    UP000053268    UP000053240    UP000001554    UP000014760    + More
UP000242457    UP000005203    UP000053454    UP000007635    UP000183832    UP000036403    UP000264840    UP000261560    UP000092461    UP000028761    UP000029965    UP000233060    UP000006718    UP000233200    UP000233120    UP000233080    UP000233100    UP000005447   

PRIDE

H9IX21    H9JFI5   

Pfam

PF00096   zf-C2H2        + More
PF07776   zf-AD
PF01352   KRAB

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type       
IPR036397   RNaseH_sf       
IPR012337   RNaseH-like_sf       
IPR001584   Integrase_cat-core       
IPR017114   YY-1-like       
IPR003656   Znf_BED       
IPR006642   Znf_Rad18_put       
IPR012934   Znf_AD       
IPR036051   KRAB_dom_sf       
IPR001909   KRAB       
IPR017125   Znf_PRDM5-like       

SUPFAM

SSF57667   SSF57667        + More
SSF53098   SSF53098       
SSF109640   SSF109640       

Gene 3D

3.30.420.10    

CDD

cd07765  KRAB_A-box

ProteinModelPortal

H9IX21   A0A1E1WGP5   A0A212FHL8   A0A194PD98   A0A0N1PH50   H9JFI5   + More
C3Y9E0   R7UVQ0   A0A2P6K8E7   C3Z1X1   A0A2A3EM08   A0A087ZWB3   A0A0L8HK47   A0A2P6K206   C3ZDP1   G3Q4S1   A0A1J1IX89   A0A0J7KTL3   A0A310SCH0   A0A3Q3CHJ2   A0A3B3CDV0   A0A1B0CNP4   A0A096NWM6   C3ZDN5   A0A0A0MVX4   A0A0D9QY77   A0A0L8HF38   C3ZDK9   A0A2K5KZY7   A0A2K5L016   A0A2K5L000   F7DM01   A0A2K6RR15   A0A2K6D817   A0A2K5HZL5   A0A2K5TNZ2   A0A2K5KZX5   A0A286XUX4  

PDB

5T0U     E-value=2.04735e-10,     Score=159

KEGG

101745212    K09228 KRAB domain-containing zinc finger protein | (RefSeq) zinc finger protein Xfin-like

GO

GO:0003676   GO:0045892   GO:0043565   GO:0045893   GO:0003700   GO:0045944   GO:0005634   GO:0003677   GO:0015074   GO:0006281   GO:0008270   GO:0046872   GO:0006355   GO:0000976   GO:0006508   GO:0005737   GO:0008235   GO:0019538   GO:0030145   GO:0015923   GO:0006260  

Length:

523

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00024

outside

1  -  523

 

 

Pi

144.700341

Theta

131.865153

Tajima's D

0.458969

CLR

0.097996

CSRT

0.497775111244438

Interpretation

Uncertain