HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	10.2	1.9	0.013	0.78	1	23	350	373
2	20.6	2.7	6.6e-06	0.0004	2	23	378	399
3	10.2	1.6	0.013	0.78	2	23	407	427
4	17.3	0.5	7.4e-05	0.0044	1	21	433	453

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.013
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ykC +C++ Fk+    k+H  + H
  KWMTBOMO06201 350 YKCLECDMFFKSTRARKTHVARyH 373
                    9******************99988 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 6.6e-06
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C++C+k+F +ks L++H++ H
  KWMTBOMO06201 378 QCDHCKKTFVNKSTLVTHLKLH 399
                    8*******************99 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.013
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +Cp+C+k+  r+ +Lk H ++H
  KWMTBOMO06201 407 ECPICHKMV-RSTQLKYHVQRH 427
                    6********.***********9 PP

  == domain 4  score: 17.3 bits;  conditional E-value: 7.4e-05
                    EEETTTTEEESSHHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHir 21 
                    y+C++C+k+F++   +++H++
  KWMTBOMO06201 433 YECEECNKVFSHLATYQAHLK 453
                    99*****************97 PP