Silkworm Genome Informatics Database

Gene

KWMTBOMO06201

Pre Gene Modal

BGIBMGA001656

Annotation

PREDICTED:_zinc_finger_and_BTB_domain-containing_protein_41-like_[Amyelois_transitella]

Location

Bomo_Chr11(-):2230142-2251760 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.163

CDS

ATGGGAGATTCGGTTCAAGATACTGAGCAGCTCGTCTGCTGGGAGTGCTTAGCAATTATGAGAAAGTTCCTGAAATTCAAATGGCAGGTGCACAATGCACAGGAGCATTTGAAGGTCAAAGGACTGAACCAGTCACAGGAAACCCTGGATCACACCTATCTCCCGCAGCCATTATCATCACTGGATGTCTCGTCAAAGTGTGATTACGACAAAATATTCTTCGACTTCACCTTTGGCGGAGACGACACCCAGTACATCTCCATCACAAACTCTGAGGATGTTAAGAGTGAGCATTATGACATGGTTACCGCTGTCAGAGACAATATCAATCTTCAAATCGAAGATCATATTCTGGAAGTTCCTGAATTCGTGTTGGGGGGACCAGTGTCGGATGTGATGTCACATATCGTTGTGGGAACTGACGAGTTGACAACAGTCGATGAGTATGAAAATAATATAAAAACTGATGGAATACCGCATTTGACAATGAGTCCCCTAACGACAACACAAGAAGACACCATCGTGGTCCAAAGGCCGAAAATCGAGAGAGTCGATATAACGCATGCGGGCTATAAAATCGAATACATGTCCGAGAGTCAGATGCTGGCTTACAGAGAGGAACTCAAGGACAAGGTCAGCTACGCCAGCTCCGTGTACAAGTGCGAGCTGTGCGTCCTGGGCTTCTACTGCCAGCAGCTCATCAAGGATCACTTCGTGTCCTGCCACCGCGCCAAGCCGGGCACCCTGGCGTGCCGGATATGCTACGTGTACGTGGAGGAGTCGAAGCTGACCTCGCACGTGGACTCGCACTACATGAAGCACGTGTGCAACCTGTGCGGCCACGTGGAGCAGAGCCGCGGCATCATGATGATCCACGTGGCCGGCCACGCCGAGACCAGGGTGCCCAGCAACGTCATCAGGATCGGGGACCTGGGGCCCTTCGGCAGCAAGGGTAGGAAGAAAAAGCAGGAAGCGACGAAGAAGGCAGCGCCGCCCGCCAAACCCGGAGATCTGCGGAGGCTGCTGTCCAAGACCACCATAGAGGGATACAAGTGCTTGGAATGCGACATGTTCTTTAAGAGCACCCGGGCTCGCAAGACCCACGTCGCGAGGTACCACCGGGAGGGCCTCCAGTGTGACCACTGCAAGAAGACCTTCGTGAACAAATCCACATTGGTCACCCATCTCAAGTTGCACGACGGTCCGTTACCGCGGGACGAGTGCCCGATATGCCACAAGATGGTGAGGTCCACGCAACTGAAGTACCACGTCCAGAGGCACAAGAGCAAGAGCCGGTACGAGTGCGAGGAGTGCAACAAGGTGTTCTCCCACCTCGCGACCTACCAGGCGCACCTCAAGTACGCCAGGGCGCACGCCACCGAGCAAGTCCTCAAGTAA

Protein

MGDSVQDTEQLVCWECLAIMRKFLKFKWQVHNAQEHLKVKGLNQSQETLDHTYLPQPLSSLDVSSKCDYDKIFFDFTFGGDDTQYISITNSEDVKSEHYDMVTAVRDNINLQIEDHILEVPEFVLGGPVSDVMSHIVVGTDELTTVDEYENNIKTDGIPHLTMSPLTTTQEDTIVVQRPKIERVDITHAGYKIEYMSESQMLAYREELKDKVSYASSVYKCELCVLGFYCQQLIKDHFVSCHRAKPGTLACRICYVYVEESKLTSHVDSHYMKHVCNLCGHVEQSRGIMMIHVAGHAETRVPSNVIRIGDLGPFGSKGRKKKQEATKKAAPPAKPGDLRRLLSKTTIEGYKCLECDMFFKSTRARKTHVARYHREGLQCDHCKKTFVNKSTLVTHLKLHDGPLPRDECPICHKMVRSTQLKYHVQRHKSKSRYECEECNKVFSHLATYQAHLKYARAHATEQVLK

Uniprot

A0A1E1W6H5 A0A2H1VWX0 A0A212F8F4 A0A2W1B288 A0A0N1IEI9 A0A212F479 + More
A0A0N1PHY6 A0A0N1IFW2 M3X0V4 A0A2K6G388 A0A2I3LPR3 A0A2J8SB89

Pubmed

22118469 28756777 26354079 17975172

EMBL

GDQN01008479 JAT82575.1 ODYU01004954 SOQ45347.1 AGBW02009729 OWR50026.1 + More
KZ150608 PZC70458.1 KQ458486 KPJ05869.1 AGBW02010415 OWR48546.1 KQ460555 KPJ14020.1 KQ460140 KPJ17511.1 AANG04002859 AHZZ02014821 NDHI03003585 PNJ18037.1

Proteomes

UP000007151 UP000053268 UP000053240 UP000011712 UP000233160 UP000028761 + More

Pfam

PF00096   zf-C2H2        + More
PF05605   zf-Di19
PF12171   zf-C2H2_jaz
PF07776   zf-AD
PF01352   KRAB

Interpro

IPR012934   Znf_AD        + More
IPR008598   Di19_Zn_binding_dom
IPR013087   Znf_C2H2_type
IPR036236   Znf_C2H2_sf
IPR022755   Znf_C2H2_jaz
IPR036051   KRAB_dom_sf
IPR001909   KRAB
IPR003656   Znf_BED

SUPFAM

SSF57667 SSF57667 + More
SSF109640 SSF109640

CDD

cd07765 KRAB_A-box

ProteinModelPortal

A0A1E1W6H5 A0A2H1VWX0 A0A212F8F4 A0A2W1B288 A0A0N1IEI9 A0A212F479 + More
A0A0N1PHY6 A0A0N1IFW2 M3X0V4 A0A2K6G388 A0A2I3LPR3 A0A2J8SB89

PDB

2I13 E-value=6.9798e-08, Score=137

KEGG

101742326 no KO assigned | (RefSeq) zinc finger and BTB domain-containing protein 41-like

GO

GO:0005634 GO:0003676 GO:0008270 GO:0046872 GO:0006355 GO:0003677 GO:0005215 GO:0022857 GO:0004559 GO:0006013 GO:0015923 GO:0006260

Length:

465

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00108

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00574

outside

1 - 465

Pi

239.188452

Theta

28.26163

Tajima's D

0.545049

CLR

0.457625

CSRT

0.527723613819309

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics