HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	9.8	1.5	0.017	1	1	23	237	260
2	18.3	0.3	3.5e-05	0.0021	3	23	266	286
3	4.0	0.2	1.3	77	2	23	294	314
4	12.7	0.7	0.0022	0.13	1	21	320	340
5	16.5	0.6	0.00014	0.0081	1	23	353	376
6	13.4	2.8	0.0013	0.078	1	23	382	405
7	16.4	0.8	0.00015	0.0088	3	23	417	437
8	10.4	1.8	0.012	0.7	2	23	444	466

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.017
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C+ C +sF +k + + H r+ H
  KWMTBOMO06193 237 FQCKFCEMSFETKRLRVGHSRRaH 260
                    89*************999999988 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 3.5e-05
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C++Cgk++++k++L +H r H
  KWMTBOMO06193 266 CSVCGKRYPSKYSLLQHERLH 286
                    *******************99 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 1.3
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C++C+k+  r ++ k+H r+H
  KWMTBOMO06193 294 ECGVCHKMI-RVDLVKAHARIH 314
                    5*******9.999999999999 PP

  == domain 4  score: 12.7 bits;  conditional E-value: 0.0022
                    EEETTTTEEESSHHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHir 21 
                    y+C +C+k++ +k ++++H++
  KWMTBOMO06193 320 YECLKCDKKYVSKASYENHLK 340
                    99*****************86 PP

  == domain 5  score: 16.5 bits;  conditional E-value: 0.00014
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ykC++C k +++k +L+ H +  H
  KWMTBOMO06193 353 YKCSVCEKGYRSKGELRDHVNYqH 376
                    9******************99888 PP

  == domain 6  score: 13.4 bits;  conditional E-value: 0.0013
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    + Cp+C k+  ++   +rHir+ H
  KWMTBOMO06193 382 HSCPICQKPLATRRCITRHIRRaH 405
                    68********************99 PP

  == domain 7  score: 16.4 bits;  conditional E-value: 0.00015
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C +Cgk F+ k +L+ H  +H
  KWMTBOMO06193 417 CQKCGKAFRYKKSLREHELIH 437
                    *****************9988 PP

  == domain 8  score: 10.4 bits;  conditional E-value: 0.012
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +C++Cg++F++   L +H r+ H
  KWMTBOMO06193 444 VCGECGRRFRQGAALYTHCRRvH 466
                    7*****************99888 PP