HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	11.2	2.8	0.0066	0.39	1	23	190	213
2	9.4	0.1	0.024	1.5	1	23	219	241
3	1.2	1.7	9.9	5.9e+02	1	23	245	267
4	8.9	2.5	0.034	2	2	23	272	294
5	9.2	0.8	0.028	1.7	1	11	297	307
6	8.5	4.6	0.046	2.7	2	23	316	338
7	13.1	1.4	0.0016	0.099	3	21	346	364
8	15.5	0.2	0.00029	0.017	2	23	377	399
9	10.8	0.5	0.0086	0.52	2	23	406	428
10	12.5	0.2	0.0025	0.15	3	23	439	459
11	15.6	0.2	0.00026	0.016	1	23	465	488

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0066
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    +kC+ C + Fk++ +L++H ++ H
  KWMTBOMO06187 190 FKCESCVYFFKNNRLLESHNKRyH 213
                    8******************99988 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.024
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++C   F++k  Lk Hi +H
  KWMTBOMO06187 219 YICDICESNFPDKLRLKMHIASH 241
                    89******************999 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 9.9
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C +C + +   s+  rH r H
  KWMTBOMO06187 245 YECQYCRQICQGDSSKGRHVREH 267
                    89****98877777777777766 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.034
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +C +C+ +F+ + ++ +H r+ H
  KWMTBOMO06187 272 QCLKCDAKFSERRDFYAHHRRlH 294
                    8*******************999 PP

  == domain 5  score: 9.2 bits;  conditional E-value: 0.028
                    EEETTTTEEES CS
        zf-C2H2   1 ykCpdCgksFk 11 
                    ++C++Cg sFk
  KWMTBOMO06187 297 FVCHHCGVSFK 307
                    89********8 PP

  == domain 6  score: 8.5 bits;  conditional E-value: 0.046
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    kC+ C+k+F r  +L  H r  H
  KWMTBOMO06187 316 KCTCCNKTFARYKSLWMHTRLsH 338
                    6888****************999 PP

  == domain 7  score: 13.1 bits;  conditional E-value: 0.0016
                    ETTTTEEESSHHHHHHHHH CS
        zf-C2H2   3 CpdCgksFkrksnLkrHir 21 
                    C +C+k F++ + ++rH++
  KWMTBOMO06187 346 CVECDKHFTDVYKYRRHLN 364
                    *****************97 PP

  == domain 8  score: 15.5 bits;  conditional E-value: 0.00029
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +Cp Cgk+F+ +  +k+H+   H
  KWMTBOMO06187 377 PCPNCGKVFSKNIYMKNHYDLvH 399
                    6*****************98777 PP

  == domain 9  score: 10.8 bits;  conditional E-value: 0.0086
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +C++C+k + rk +L +H  + H
  KWMTBOMO06187 406 RCEECDKNYLRKADLLKHKLRiH 428
                    7*****************99988 PP

  == domain 10  score: 12.5 bits;  conditional E-value: 0.0025
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C++C++ F+++  L +H rtH
  KWMTBOMO06187 439 CGVCSRGFTTNRILANHVRTH 459
                    ********************9 PP

  == domain 11  score: 15.6 bits;  conditional E-value: 0.00026
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y C +C  +F+++s L +H r+ H
  KWMTBOMO06187 465 YSCAICAATFTQNSALSTHVRSkH 488
                    89*******************999 PP