HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	7.1	0.9	0.13	7.8	1	23	60	83
2	7.9	4.4	0.074	4.4	1	23	89	111
3	8.1	0.3	0.064	3.8	1	23	115	138
4	1.9	5.9	5.8	3.5e+02	1	23	145	169
5	3.5	0.2	1.8	1.1e+02	2	23	173	195
6	19.9	1.0	1.1e-05	0.00068	1	23	201	224
7	9.5	1.6	0.022	1.3	4	23	232	254
8	21.0	1.1	5e-06	0.0003	1	23	262	285
9	20.1	1.8	9.7e-06	0.00058	1	22	292	313
10	13.8	1.2	0.00093	0.056	3	23	326	346
11	12.3	0.6	0.003	0.18	1	23	352	375

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.13
                   EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirt.H 23
                   ykC +C  s+ +  nL rH+   H
  KWMTBOMO06192 60 YKCQKCIISYDHAINLDRHLTLsH 83
                   9******************98877 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.074
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++C  ++ + s  ++H ++H
  KWMTBOMO06192  89 HVCDVCECTYDTESKVRTHTKRH 111
                    79********************9 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.064
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ykC +C+k + +k   ++H++  H
  KWMTBOMO06192 115 YKCMECDKLYQDKQTAVVHYKEaH 138
                    9******************99888 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 5.8
                    EEET..TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                    y+C+  +C     +  ++k H+ +H
  KWMTBOMO06192 145 YRCDlsHCRFETASHRSYKYHQAKH 169
                    99*********************99 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 1.8
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    kC+ C+ ++ +  +L+ Hi+t H
  KWMTBOMO06192 173 KCSLCDGMYLQGTQLRMHINTvH 195
                    68888888888899******999 PP

  == domain 6  score: 19.9 bits;  conditional E-value: 1.1e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    +kC+ C+k++k++  L++H r+ H
  KWMTBOMO06192 201 FKCESCDKVYKHRAGLRAHVRSaH 224
                    8********************999 PP

  == domain 7  score: 9.5 bits;  conditional E-value: 0.022
                    TTTT...EEESSHHHHHHHHHCC CS
        zf-C2H2   4 pdCg...ksFkrksnLkrHirtH 23 
                    ++Cg   k F++ s L +H+  H
  KWMTBOMO06192 232 HYCGpccKFFSTASTLAQHLIEH 254
                    6899999*************998 PP

  == domain 8  score: 21.0 bits;  conditional E-value: 5e-06
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C+dC+k++++k  L++Hi t H
  KWMTBOMO06192 262 YVCDDCSKRYSTKRFLRQHIETaH 285
                    9********************999 PP

  == domain 9  score: 20.1 bits;  conditional E-value: 9.7e-06
                    EEETTTTEEESSHHHHHHHHHC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt 22 
                    ykC++C+k F+++  L+rH   
  KWMTBOMO06192 292 YKCTICDKIFNTSFTLRRHVEF 313
                    9******************865 PP

  == domain 10  score: 13.8 bits;  conditional E-value: 0.00093
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C++Cg+ F ++  L +HirtH
  KWMTBOMO06192 326 CEHCGRGFMTNKILSSHIRTH 346
                    ********************9 PP

  == domain 11  score: 12.3 bits;  conditional E-value: 0.003
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C  Cg +F ++  + +H r  H
  KWMTBOMO06192 352 YVCQLCGATFGHSGAMYTHKRLlH 375
                    99*******************999 PP