HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	5.0	2.6	0.58	35	1	23	142	165
2	13.8	2.6	0.00095	0.057	1	23	171	193
3	4.2	0.9	1.1	66	1	16	197	212
4	7.4	1.9	0.1	6.2	1	23	227	251
5	4.5	0.4	0.85	51	3	23	256	276
6	18.2	0.3	3.9e-05	0.0023	2	23	283	305
7	22.2	1.5	2.1e-06	0.00013	2	23	314	335
8	14.9	0.3	0.00042	0.025	1	23	343	366
9	15.5	7.3	0.00028	0.017	1	23	373	396
10	18.5	0.4	3.1e-05	0.0018	3	23	407	427
11	16.0	0.7	0.00019	0.011	1	23	433	456

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.58
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    +kC++C  s+ +  +L++H+   H
  KWMTBOMO06191 142 HKCEKCVVSYDNDLHLRNHLLLrH 165
                    79******************9888 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 0.00095
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykC++C+ ++ +   L++H r+H
  KWMTBOMO06191 171 YKCEICDCTYDTELKLETHTRRH 193
                    9*********************9 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 1.1
                    EEETTTTEEESSHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnL 16 
                    ++C +C+k++ ++   
  KWMTBOMO06191 197 FECLECNKRYVDRKTA 212
                    89********998765 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.1
                    EEET..TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                    y C+  +C++  ++  +L+ H ++H
  KWMTBOMO06191 227 YSCDyvHCSYETNSLASLRYHASKH 251
                    89*********************99 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.85
                    ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                    C+ C+k++     L +H++  H
  KWMTBOMO06191 256 CELCKKTY-PYGRLWNHMNLvH 276
                    99******.9999999999888 PP

  == domain 6  score: 18.2 bits;  conditional E-value: 3.9e-05
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    kC+ C+ks+k++s L  H+ + H
  KWMTBOMO06191 283 KCDLCDKSYKQRSALAMHRLSaH 305
                    8******************9988 PP

  == domain 7  score: 22.2 bits;  conditional E-value: 2.1e-06
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C dCgk F++k++L +H+r H
  KWMTBOMO06191 314 YCVDCGKFFCNKYSLAVHLREH 335
                    5*******************99 PP

  == domain 8  score: 14.9 bits;  conditional E-value: 0.00042
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C+dCg ++ ++ + +rHi + H
  KWMTBOMO06191 343 YECDDCGLKYYTRRSIVRHITSaH 366
                    99******************9988 PP

  == domain 9  score: 15.5 bits;  conditional E-value: 0.00028
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    +kCp C+k F + ++ +rH+r  H
  KWMTBOMO06191 373 HKCPRCDKIFATAHHKRRHMRLkH 396
                    79*******************999 PP

  == domain 10  score: 18.5 bits;  conditional E-value: 3.1e-05
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C++C  sF+++ +Lk+HirtH
  KWMTBOMO06191 407 CEICASSFTSSKMLKAHIRTH 427
                    ********************9 PP

  == domain 11  score: 16.0 bits;  conditional E-value: 0.00019
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+Cp+C  +F ++  L +H r  H
  KWMTBOMO06191 433 YVCPVCEATFAHSGTLYNHKRLmH 456
                    9********************999 PP