HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	10.2	0.9	0.013	0.77	1	23	230	252
2	6.8	1.0	0.17	10	1	23	260	282
3	4.2	3.9	1.1	64	1	23	313	336
4	19.1	1.9	1.9e-05	0.0012	2	23	340	362
5	14.6	0.9	0.00052	0.031	2	23	366	388
6	9.2	0.7	0.027	1.6	2	21	402	421
7	20.3	0.5	8.4e-06	0.0005	2	23	435	457
8	4.0	1.4	1.3	76	1	21	463	483
9	15.7	0.5	0.00024	0.014	3	23	497	517
10	15.5	3.0	0.00028	0.017	1	23	523	546

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.013
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykC+dC   +k+k + +rH   H
  KWMTBOMO06189 230 YKCEDCVLGYKDKRDWNRHNALH 252
                    9******************8885 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.17
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykC++C+ ++ + + L +H  tH
  KWMTBOMO06189 260 YKCSECKTKCQTIDVLAQHWITH 282
                    9******************9999 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 1.1
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C++Cg   ++  ++ +H+++ H
  KWMTBOMO06189 313 FTCKECGDHSRTLREFSQHYKSkH 336
                    89*****9999********99988 PP

  == domain 4  score: 19.1 bits;  conditional E-value: 1.9e-05
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +C++Cgk F  k  L++H+r+ H
  KWMTBOMO06189 340 VCDHCGKGFYKKRVLESHMRRnH 362
                    7********************99 PP

  == domain 5  score: 14.6 bits;  conditional E-value: 0.00052
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    kC++Cg+ ++  + L++H+rt H
  KWMTBOMO06189 366 KCEVCGRQYSLYHTLEVHLRTvH 388
                    7********************99 PP

  == domain 6  score: 9.2 bits;  conditional E-value: 0.027
                    EETTTTEEESSHHHHHHHHH CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHir 21 
                    +C +C++ +++ + +++H++
  KWMTBOMO06189 402 YCVECDRQYPSVYKYRKHLK 421
                    5*****************97 PP

  == domain 7  score: 20.3 bits;  conditional E-value: 8.4e-06
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +Cp+Cgk+F+r   +++H+r  H
  KWMTBOMO06189 435 PCPECGKVFTRTNYMNNHYRLfH 457
                    6*******************999 PP

  == domain 8  score: 4.0 bits;  conditional E-value: 1.3
                    EEETTTTEEESSHHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHir 21 
                    ++C  C+k F + +  ++H  
  KWMTBOMO06189 463 HYCQLCNKLFVTGYAARKHKE 483
                    68**********999999975 PP

  == domain 9  score: 15.7 bits;  conditional E-value: 0.00024
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C++Cg+ F+++  L++H+rtH
  KWMTBOMO06189 497 CDICGRGFSTNRILTNHRRTH 517
                    ********************9 PP

  == domain 10  score: 15.5 bits;  conditional E-value: 0.00028
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ykCp+C+  F ++  + +H+++ H
  KWMTBOMO06189 523 YKCPHCTAAFAQSTAMHTHMKSqH 546
                    9********************999 PP