HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	7.7	0.5	0.083	5	1	23	220	243
2	7.0	1.5	0.14	8.4	1	23	250	272
3	1.2	0.4	9.4	5.6e+02	1	13	276	288
4	8.8	0.1	0.037	2.2	3	23	309	330
5	17.1	1.2	8.9e-05	0.0053	3	21	334	352

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.083
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ykC+ C   F rk+n+  Hi + H
  KWMTBOMO06185 220 YKCDSCVLGFMRKENYDLHIVKkH 243
                    9*******************9888 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.14
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+Cp+C  +F    ++++H ++H
  KWMTBOMO06185 250 YVCPVCQVRFACEASMNKHKSKH 272
                    9******************9999 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 9.4
                    EEETTTTEEESSH CS
        zf-C2H2   1 ykCpdCgksFkrk 13 
                    y+C  C+   +  
  KWMTBOMO06185 276 YRCRLCSFETSEL 288
                    99****9876655 PP

  == domain 4  score: 8.8 bits;  conditional E-value: 0.037
                    ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                    C +C  + k+ ++L  H+r  H
  KWMTBOMO06185 309 CAECEVVVKTGDELSEHMRLkH 330
                    99*****************999 PP

  == domain 5  score: 17.1 bits;  conditional E-value: 8.9e-05
                    ETTTTEEESSHHHHHHHHH CS
        zf-C2H2   3 CpdCgksFkrksnLkrHir 21 
                    C++Cg++Fk k+ L++H+r
  KWMTBOMO06185 334 CNECGEKFKGKHTLRTHMR 352
                    ******************8 PP