Silkworm Genome Informatics Database

Gene

KWMTBOMO06185

Pre Gene Modal

BGIBMGA001775

Annotation

PREDICTED:_zinc_finger_protein_28-like_[Bombyx_mori]

Location

Bomo_Chr11(+):2006551-2011115 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.291

CDS

ATGCGAAATTCTTTATCGAAACTAGACGTAACTACAACTACTAACTTTAATTACGAGCTTGAATTTGATTACGATCCATTAACAAATGCAGATACAGATAAAAAATCACACGTAAAAACTGAAAGTGTTTACGAGATCACAGATTCTATTGAAACACCATATAATGTAGCCAACACAGTGAATGCTTATGCAGAAAAAGTTGAATGCACAGCAAAGATAAAAGGCAAGAAACCAAAAACCGTTAACAAAGAGACTTCAAATAATAAATTCAAAACAACCAGTACATTATTTAACAAATTAGGAAAGATTAAAACAATTAAAGAGTTAAATTCTAGAAATAAACAAAAAATAGATTCACATGTCTATAAAGAAAACATAAAATCTATAAAAAAGAGGAAATTAAAGAGAAAAGATAAAGAGGATATATCTATTAACTGTAGTATAAGTAAAAAGATAACAAAAAGTGATATTGTCAAAGGAATATTAAGGAAAGATAATGATAGTTATTCAGATGATACTGAAAAAGAAGATAATCAAGTAACCAATGGTTGTGTACAAGATTTTAAAGATAAATTCGAAGAAGTAAAATATAGTGAGAACGAATTGGAAAAGATAAGAGAAGATAAAAGGAAACATTATAATTTCAAAAAGATACCTTACAAATGTGACAGTTGTGTATTGGGTTTTATGAGAAAAGAAAATTACGACTTGCATATCGTCAAAAAACACGACCAGACCGTAGGTGAATATGTTTGTCCGGTATGCCAAGTAAGATTCGCTTGCGAGGCCTCAATGAACAAACACAAGAGCAAACATTTCGTATCGTACAGATGTCGCTTGTGCAGCTTCGAAACGTCAGAGCTTTGGTCGGCCGTAAAACACGACAAGAGAAAGCACAAATTCGATAGTAATGACAAGATTCATTGTGCAGAATGTGAGGTCGTTGTCAAAACCGGAGACGAATTGTCTGAGCACATGAGACTCAAACATGTATTGTTCTGTAATGAGTGCGGTGAGAAGTTCAAAGGGAAACACACGCTGAGAACGCACATGAGGTGA

Protein

MRNSLSKLDVTTTTNFNYELEFDYDPLTNADTDKKSHVKTESVYEITDSIETPYNVANTVNAYAEKVECTAKIKGKKPKTVNKETSNNKFKTTSTLFNKLGKIKTIKELNSRNKQKIDSHVYKENIKSIKKRKLKRKDKEDISINCSISKKITKSDIVKGILRKDNDSYSDDTEKEDNQVTNGCVQDFKDKFEEVKYSENELEKIREDKRKHYNFKKIPYKCDSCVLGFMRKENYDLHIVKKHDQTVGEYVCPVCQVRFACEASMNKHKSKHFVSYRCRLCSFETSELWSAVKHDKRKHKFDSNDKIHCAECEVVVKTGDELSEHMRLKHVLFCNECGEKFKGKHTLRTHMR

Uniprot

H9IWZ2

Pubmed

19121390

EMBL

BABH01021145 BABH01021146

Proteomes

UP000005204

PRIDE

H9IWZ2

Interpro

IPR013087 Znf_C2H2_type + More
IPR036236 Znf_C2H2_sf

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

H9IWZ2

PDB

5UND E-value=9.73476e-06, Score=117

KEGG

101740902 no KO assigned | (RefSeq) zinc finger protein 28-like

GO

GO:0003676 GO:0046872 GO:0016021 GO:0016020 GO:0022891 GO:0022857 GO:0004559 GO:0006013 GO:0015923 GO:0005634 GO:0006260

Length:

352

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00018

Exp number, first 60 AAs:

0

Total prob of N-in:

0.03201

outside

1 - 352

Pi

231.172209

Theta

136.107362

Tajima's D

2.710788

CLR

0.45958

CSRT

0.963501824908755

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics