HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	15.9	0.9	0.0002	0.012	2	23	43	65
2	10.3	5.9	0.012	0.73	1	23	91	113
3	18.6	1.4	2.8e-05	0.0017	1	23	120	142
4	2.3	0.9	4.3	2.6e+02	3	20	143	160
5	9.1	2.1	0.029	1.7	1	23	170	192
6	8.3	2.3	0.055	3.3	1	23	197	220
7	4.7	0.2	0.74	44	1	21	240	260
8	3.6	1.4	1.7	1e+02	1	20	277	296
9	19.2	3.6	1.9e-05	0.0011	1	23	385	408
10	6.9	3.0	0.15	8.7	2	20	415	433

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 0.0002
                   EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2  2 kCpdCgksFkrksnLkrHirt.H 23
                   kC++C ks+++   L +H+ + H
  KWMTBOMO06169 43 KCNICEKSYPTEKKLLKHQDKkH 65
                   8******************9988 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.012
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC +C+k Fk   +Lk+H + H
  KWMTBOMO06169  91 HKCRKCPKIFKEYKSLKAHSKLH 113
                    79*****************9996 PP

  == domain 3  score: 18.6 bits;  conditional E-value: 2.8e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++C+k+F ++  +k+Hi+ H
  KWMTBOMO06169 120 YICNYCNKKFVDRVFFKVHIKLH 142
                    89*******************99 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 4.3
                    ETTTTEEESSHHHHHHHH CS
        zf-C2H2   3 CpdCgksFkrksnLkrHi 20 
                    C++Cg  F++k  + +H+
  KWMTBOMO06169 143 CDVCGLLFSSKLKYLQHR 160
                    9********999999997 PP

  == domain 5  score: 9.1 bits;  conditional E-value: 0.029
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C +C++s+ r  +Lk H   H
  KWMTBOMO06169 170 HQCRICNESYFRYMDLKDHSLEH 192
                    79*****************8877 PP

  == domain 6  score: 8.3 bits;  conditional E-value: 0.055
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C++C++ F +k    +H++  H
  KWMTBOMO06169 197 YVCDVCKEQFDTKCAIAHHLKFlH 220
                    9******************99777 PP

  == domain 7  score: 4.7 bits;  conditional E-value: 0.74
                    EEETTTTEEESSHHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHir 21 
                    y C  C++s  +k + ++H +
  KWMTBOMO06169 240 YLCRFCDESSVDKRLIEKHTQ 260
                    66*****************75 PP

  == domain 8  score: 3.6 bits;  conditional E-value: 1.7
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHi 20 
                    y C+ C ++F++  ++ +H 
  KWMTBOMO06169 277 YFCDQCMRKFSTETDMLQHK 296
                    78*************99995 PP

  == domain 9  score: 19.2 bits;  conditional E-value: 1.9e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++Cp+Cgk +++++ L+rHi + H
  KWMTBOMO06169 385 HQCPICGKYYSTNYCLNRHIESqH 408
                    79******************9988 PP

  == domain 10  score: 6.9 bits;  conditional E-value: 0.15
                    EETTTTEEESSHHHHHHHH CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHi 20 
                     C++C ++F  +s+L++H 
  KWMTBOMO06169 415 HCHVCEETFVWPSLLRSHK 433
                    5*****************7 PP