HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	24.9	0.8	2.8e-07	1.7e-05	1	23	16	38
2	22.9	1.5	1.2e-06	7.3e-05	1	23	44	66
3	18.1	4.1	4.2e-05	0.0025	1	23	72	94
4	27.2	1.0	5.2e-08	3.1e-06	1	23	100	122
5	13.9	1.8	0.00091	0.054	1	23	128	150
6	20.1	3.8	9.6e-06	0.00058	1	23	156	178
7	14.8	6.9	0.00047	0.028	1	23	184	206
8	29.1	1.3	1.3e-08	7.7e-07	1	23	212	234
9	13.0	3.2	0.0017	0.1	1	23	240	262
10	21.1	0.2	4.6e-06	0.00028	1	23	268	290
11	16.2	4.2	0.00017	0.01	1	23	296	318
12	18.2	1.8	3.9e-05	0.0023	1	23	324	346
13	23.3	1.6	9.3e-07	5.6e-05	1	23	352	374

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 2.8e-07
                   EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                   + C++C+ksF +  +LkrH+rtH
  KWMTBOMO06130 16 HNCEVCDKSFAQAVELKRHLRTH 38
                   68********************9 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 1.2e-06
                   EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                   y+C++C+k+F  k +Lk+H+rtH
  KWMTBOMO06130 44 YVCEVCDKKFVLKWHLKVHQRTH 66
                   9*********************9 PP

  == domain 3  score: 18.1 bits;  conditional E-value: 4.2e-05
                   EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                   y+C++C+k+F  k +Lk+H++tH
  KWMTBOMO06130 72 YVCEVCDKKFVLKCHLKVHQSTH 94
                   9*********************9 PP

  == domain 4  score: 27.2 bits;  conditional E-value: 5.2e-08
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++C+k Fkr sn+krH+r+H
  KWMTBOMO06130 100 YVCEVCDKGFKRISNFKRHQRVH 122
                    9*********************9 PP

  == domain 5  score: 13.9 bits;  conditional E-value: 0.00091
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++C+k F r + L+rH+++H
  KWMTBOMO06130 128 YICEVCHKIFLRMETLQRHLSRH 150
                    89********************9 PP

  == domain 6  score: 20.1 bits;  conditional E-value: 9.6e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++C+k+F++   LkrH+rtH
  KWMTBOMO06130 156 YMCEVCKKRFTHIAYLKRHLRTH 178
                    89********************9 PP

  == domain 7  score: 14.8 bits;  conditional E-value: 0.00047
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++C+k+++ k +Lk+H rtH
  KWMTBOMO06130 184 YVCEVCDKRYRLKCSLKKHHRTH 206
                    9*********************9 PP

  == domain 8  score: 29.1 bits;  conditional E-value: 1.3e-08
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++C ksFk+ ++LkrH+rtH
  KWMTBOMO06130 212 YVCEVCEKSFKSLYDLKRHLRTH 234
                    9*********************9 PP

  == domain 9  score: 13.0 bits;  conditional E-value: 0.0017
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++C k+F  k++Lk+H+ tH
  KWMTBOMO06130 240 YVCEVCYKRFMLKHSLKNHQVTH 262
                    9*******************999 PP

  == domain 10  score: 21.1 bits;  conditional E-value: 4.6e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++C+k Fk+  nLk H+ tH
  KWMTBOMO06130 268 YVCEVCDKGFKSLNNLKGHLETH 290
                    9********************99 PP

  == domain 11  score: 16.2 bits;  conditional E-value: 0.00017
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++C++sF+r   Lk+H+ +H
  KWMTBOMO06130 296 YICEVCHRSFSRMNRLKKHLTRH 318
                    89*******************99 PP

  == domain 12  score: 18.2 bits;  conditional E-value: 3.9e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++C+k+F  k++Lk+H+ +H
  KWMTBOMO06130 324 YMCEVCDKRFVLKHSLKKHQIIH 346
                    89******************999 PP

  == domain 13  score: 23.3 bits;  conditional E-value: 9.3e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++C+k F + +nLk+H+rtH
  KWMTBOMO06130 352 YVCEVCDKGFMTIHNLKKHLRTH 374
                    9*********************9 PP