HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	22.8	1.3	1.4e-06	8.1e-05	1	23	10	32
2	23.6	0.5	7.2e-07	4.3e-05	1	23	38	60
3	21.9	3.8	2.5e-06	0.00015	1	23	66	88
4	28.9	1.2	1.6e-08	9.6e-07	1	23	94	116
5	20.4	3.3	7.6e-06	0.00046	1	23	122	144
6	23.1	2.0	1.1e-06	6.3e-05	1	23	150	172
7	21.1	2.4	4.6e-06	0.00027	1	23	178	200
8	21.9	0.4	2.6e-06	0.00015	1	23	206	228
9	24.1	0.7	5.1e-07	3.1e-05	1	23	234	256
10	23.5	0.8	8e-07	4.8e-05	3	23	264	284
11	23.8	0.2	6.3e-07	3.7e-05	1	23	290	312
12	22.0	1.0	2.5e-06	0.00015	1	23	318	340
13	18.7	1.0	2.7e-05	0.0016	1	23	346	368

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.4e-06
                   EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                   y C++C+k+F+  snLk H+r+H
  KWMTBOMO06129 10 YICEVCDKRFTEYSNLKIHRRKH 32
                   89********************9 PP

  == domain 2  score: 23.6 bits;  conditional E-value: 7.2e-07
                   EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                   y+C++C k+F++  nLk+H+ tH
  KWMTBOMO06129 38 YVCEVCQKRFSDANNLKTHLLTH 60
                   9*********************9 PP

  == domain 3  score: 21.9 bits;  conditional E-value: 2.5e-06
                   EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                   + C+ C+ksF +  +LkrH+rtH
  KWMTBOMO06129 66 HICEMCNKSFIHTGDLKRHLRTH 88
                   67********************9 PP

  == domain 4  score: 28.9 bits;  conditional E-value: 1.6e-08
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++C+k+F++ snLkrH rtH
  KWMTBOMO06129  94 YVCEVCDKRFSDASNLKRHFRTH 116
                    9*********************9 PP

  == domain 5  score: 20.4 bits;  conditional E-value: 7.6e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++C+ksF  +s L+rH++tH
  KWMTBOMO06129 122 YVCKVCDKSFACRSTLERHQKTH 144
                    9*********************9 PP

  == domain 6  score: 23.1 bits;  conditional E-value: 1.1e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C+ C+k+F +  +LkrH rtH
  KWMTBOMO06129 150 FNCETCDKTFAHTGELKRHVRTH 172
                    89********************9 PP

  == domain 7  score: 21.1 bits;  conditional E-value: 4.6e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C+ C+ksF rk  L +H+rtH
  KWMTBOMO06129 178 YCCELCDKSFARKNTLDVHLRTH 200
                    88********************9 PP

  == domain 8  score: 21.9 bits;  conditional E-value: 2.6e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++C+k+    snLk+H+rtH
  KWMTBOMO06129 206 YVCEVCDKRLAFASNLKTHLRTH 228
                    9*********************9 PP

  == domain 9  score: 24.1 bits;  conditional E-value: 5.1e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++C+k F +  +LkrH+ tH
  KWMTBOMO06129 234 YSCEVCDKGFAHTGDLKRHMITH 256
                    89********************9 PP

  == domain 10  score: 23.5 bits;  conditional E-value: 8e-07
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C+ C+ksF+++s L rH+r+H
  KWMTBOMO06129 264 CKRCDKSFTNQSALDRHLRIH 284
                    ********************9 PP

  == domain 11  score: 23.8 bits;  conditional E-value: 6.3e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++C+k F ++s+Lk+H+rtH
  KWMTBOMO06129 290 YVCEVCDKIFLDPSDLKKHLRTH 312
                    9*********************9 PP

  == domain 12  score: 22.0 bits;  conditional E-value: 2.5e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++C+k+F+    Lk+H+r+H
  KWMTBOMO06129 318 YVCKVCDKKFSVARYLKTHLRIH 340
                    9*********************9 PP

  == domain 13  score: 18.7 bits;  conditional E-value: 2.7e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++C+k+F+    Lk H+rtH
  KWMTBOMO06129 346 YVCEVCDKKFSVGRYLKMHQRTH 368
                    9*********************9 PP