Gene

KWMTBOMO06129

Pre Gene Modal

BGIBMGA001685

Annotation

PREDICTED:_zinc_finger_protein_600-like_[Bombyx_mori]

Location

Bomo_Chr11(-):838395-839674      View in EpiBrowser

Full name

Zinc finger protein      

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 4.03

CDS

ATGCATCTAACAGATCGAAAAAGACCTTATATTTGTGAAGTGTGTGATAAACGTTTTACAGAATATAGCAATTTAAAAATACATCGCAGAAAACATACAGAAGGAAAACCTTACGTATGTGAAGTATGTCAAAAGAGATTTTCCGATGCGAATAATTTAAAAACGCATTTATTAACACATACCGGAGAGAAACCTCATATTTGCGAAATGTGCAATAAGAGTTTTATACACACGGGCGATTTAAAAAGACATTTAAGAACACATACTGGAGAAAGACCCTATGTGTGTGAAGTTTGTGATAAAAGATTTTCAGATGCAAGTAATTTGAAAAGACACTTTAGAACGCATACCGGAGAAAAATCTTATGTTTGTAAAGTTTGTGATAAAAGTTTTGCGTGTAGGAGTACCTTGGAGAGACATCAAAAAACTCATACCGGAGAAAAACCTTTTAATTGTGAGACGTGTGATAAAACTTTTGCTCACACCGGTGAACTCAAAAGACATGTTAGGACACATACCGGCGAAAAGCCTTATTGTTGTGAGCTTTGCGATAAAAGCTTTGCACGGAAAAATACCTTGGATGTACACCTACGAACGCATACTGATGAAAAACCATATGTTTGTGAAGTGTGCGATAAGAGACTTGCGTTTGCTAGTAATTTGAAAACCCATTTAAGGACCCACACCGGCGAAAAACCTTATTCTTGTGAAGTGTGTGATAAAGGCTTTGCCCACACGGGTGACTTAAAAAGACATATGATAACACATACCAGAGAAAAGCCTTATGGTTGTAAACGATGTGATAAAAGTTTTACAAACCAGAGTGCCTTAGACAGACATCTGAGAATACATACTGCAGAAAAATCTTATGTTTGTGAAGTGTGCGATAAGATATTTTTAGATCCTAGCGATTTGAAAAAGCATTTAAGGACACATAACAAAGAAAAACCTTATGTTTGTAAAGTTTGCGATAAGAAGTTTTCCGTTGCTCGATATCTTAAAACGCATTTAAGGATACACACCAGAGAAAAACTGTATGTTTGTGAAGTGTGCGATAAAAAATTCTCTGTTGGTCGTTACTTGAAGATGCACCAAAGGACTCATAGCGGAGAAATACCATTTGTATGCGAAGTCGTGATGTCTGTAGGTACCAATAACCACTGA

Protein

MHLTDRKRPYICEVCDKRFTEYSNLKIHRRKHTEGKPYVCEVCQKRFSDANNLKTHLLTHTGEKPHICEMCNKSFIHTGDLKRHLRTHTGERPYVCEVCDKRFSDASNLKRHFRTHTGEKSYVCKVCDKSFACRSTLERHQKTHTGEKPFNCETCDKTFAHTGELKRHVRTHTGEKPYCCELCDKSFARKNTLDVHLRTHTDEKPYVCEVCDKRLAFASNLKTHLRTHTGEKPYSCEVCDKGFAHTGDLKRHMITHTREKPYGCKRCDKSFTNQSALDRHLRIHTAEKSYVCEVCDKIFLDPSDLKKHLRTHNKEKPYVCKVCDKKFSVARYLKTHLRIHTREKLYVCEVCDKKFSVGRYLKMHQRTHSGEIPFVCEVVMSVGTNNH

Uniprot

H9IWQ3   J9JJ22   J9JZ45   J9JQB7   J9JMS6   X1WP87   + More
X1WW20   J9JWR5   X1XQ08   X1WQB0   J9JNC1   X1WUX7   A0A3B3C4I9   X1WX70   J9JJH7   X1XFU6   X1XP18   A0A3P9HWB1   J9K1Q9   A0A3B3DAR9   X1XR32   J9JSS0   A0A3P9HTS6   A0A2P6KCW4   A0A2P6K6R3   A0A2P6K6Q8   C3ZGR5   A0A2P6K572   C3Z1W9   X1WN76   J9K0J4   J9JLS6   C3XQ44   J9JKW3   C3ZPS8   J9JNF5   J9JK94   C3YAL2   A0A2P6K172   A0A2G8JL94   J9KG92   C3Z1W6   C3ZDL6   C3ZDJ9   A0A3P9I0J9   A0A3B3CBU2   J9K2S7   A0A2P6K4A5   A0A2P6K5T1   J9K2Z9   A0A2P6KF50   A0A3B3H8M9   J9K3N2   A0A2P6KZU1   J9K4V2   J9JPB3   A0A3B3CSI8   A0A2P6JUN9   A0A3B3BP63   C3XQU7   X1X8U1   A0A3B3DAU1   A0A087U2Y4   A0A2P6K7N8   A0A3P9J8W2   X1XFT7   A0A2P6KH06   C3ZDM5   H2L3J8   X1XNT2   C3Z903   A0A2P6K5J1   A0A3B3BZX4   A0A3B3DGN8   A0A087UF07   A0A2P6KFU8   A0A087TG20   J9JXH3   A0A146P3B3   C3YAI3   A0A2P6K3I2   A0A3B3BXK7   A0A3B3D1X1   J9L823   A0A3B3DGJ6   A0A087V185   A0A146P0B7   C3ZPQ0   C3ZQN5   A0A3B3C1F5   A0A146Q733   C3ZII5   A0A3P9JA95   C3ZDN1   A0A3P9M2M6   A0A3B3C2C9   C3ZDP1   C3ZDP0   A0A3B3DE58   A0A3B3I873  

EC Number

2.1.1.-

Pubmed

19121390    29451363    17554307    18563158    29023486   

EMBL

BABH01021013    ABLF02033404    ABLF02009642    ABLF02020710    ABLF02032781    ABLF02047065    + More
ABLF02063720    ABLF02038601    ABLF02029797    ABLF02029788    ABLF02038588    ABLF02038606    ABLF02038607    ABLF02020406    ABLF02024472    ABLF02025528    ABLF02025523    ABLF02038592    ABLF02005500    ABLF02005501    ABLF02009116    ABLF02009117    ABLF02009118    ABLF02009119    ABLF02060218    ABLF02063036    ABLF02066102    ABLF02066235    ABLF02017959    ABLF02024899    ABLF02011913    ABLF02020429    ABLF02025261    MWRG01015784    PRD24168.1    MWRG01023250    PRD22026.1    MWRG01023322    PRD22014.1    GG666620    EEN48291.1    MWRG01026172    PRD21467.1    GG666573    EEN53486.1    ABLF02030153    ABLF02009504    GG666451    EEN70065.1    ABLF02007945    ABLF02021897    ABLF02057411    GG666659    EEN45307.1    ABLF02040395    ABLF02022486    ABLF02022489    ABLF02022496    ABLF02022497    ABLF02022499    ABLF02022500    ABLF02063679    GG666494    EEN62760.1    MWRG01045277    PRD20076.1    MRZV01001663    PIK36521.1    ABLF02037187    EEN53483.1    GG666612    EEN48822.1    EEN48805.1    ABLF02009698    ABLF02018747    MWRG01030637    PRD21150.1    MWRG01025029    PRD21660.1    ABLF02039175    MWRG01013681    PRD24960.1    ABLF02030560    ABLF02030568    MWRG01003147    PRD31847.1    ABLF02014787    ABLF02011791    ABLF02011792    MWRG01157310    PRD17780.1    GG666456    EEN69542.1    ABLF02018325    KK117904    KFM71723.1    MWRG01021789    PRD22340.1    ABLF02029786    ABLF02029793    ABLF02029794    ABLF02048372    MWRG01012199    PRD25597.1    EEN48831.1    ABLF02003804    ABLF02003805    ABLF02003807    ABLF02004643    ABLF02004644    GG666598    EEN50915.1    MWRG01025419    PRD21595.1    KK119529    KFM75946.1    MWRG01013077    PRD25216.1    KK115052    KFM64059.1    ABLF02020230    ABLF02020231    GCES01147881    JAQ38441.1    EEN62731.1    MWRG01032674    PRD20891.1    ABLF02009695    ABLF02018750    ABLF02061073    ABLF02063523    KL819331    KFM83374.1    GCES01149080    JAQ37242.1    EEN45471.1    GG666662    EEN45081.1    GCES01134229    JAQ52093.1    GG666627    EEN47710.1    EEN48837.1    EEN48847.1    EEN48846.1   

Proteomes

UP000005204    UP000007819    UP000261560    UP000265200    UP000001554    UP000230750    + More
UP000001038    UP000054359    UP000265180   

PRIDE

H9IWQ3   

Pfam

PF00096   zf-C2H2        + More
PF14291   DUF4371
PF12171   zf-C2H2_jaz
PF00078   RVT_1
PF13359   DDE_Tnp_4
PF05380   Peptidase_A17

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type       
IPR017114   YY-1-like       
IPR017126   Znf_PRDM12       
IPR017125   Znf_PRDM5-like       
IPR025398   DUF4371       
IPR022755   Znf_C2H2_jaz       
IPR003656   Znf_BED       
IPR001965   Znf_PHD       
IPR003604   Matrin/U1-like-C_Znf_C2H2       
IPR000477   RT_dom       
IPR011017   TRASH_dom       
IPR036397   RNaseH_sf       
IPR027806   HARBI1_dom       
IPR012337   RNaseH-like_sf       
IPR008042   Retrotrans_Pao       

SUPFAM

SSF57667   SSF57667        + More
SSF53098   SSF53098       

Gene 3D

3.30.420.10    

ProteinModelPortal

H9IWQ3   J9JJ22   J9JZ45   J9JQB7   J9JMS6   X1WP87   + More
X1WW20   J9JWR5   X1XQ08   X1WQB0   J9JNC1   X1WUX7   A0A3B3C4I9   X1WX70   J9JJH7   X1XFU6   X1XP18   A0A3P9HWB1   J9K1Q9   A0A3B3DAR9   X1XR32   J9JSS0   A0A3P9HTS6   A0A2P6KCW4   A0A2P6K6R3   A0A2P6K6Q8   C3ZGR5   A0A2P6K572   C3Z1W9   X1WN76   J9K0J4   J9JLS6   C3XQ44   J9JKW3   C3ZPS8   J9JNF5   J9JK94   C3YAL2   A0A2P6K172   A0A2G8JL94   J9KG92   C3Z1W6   C3ZDL6   C3ZDJ9   A0A3P9I0J9   A0A3B3CBU2   J9K2S7   A0A2P6K4A5   A0A2P6K5T1   J9K2Z9   A0A2P6KF50   A0A3B3H8M9   J9K3N2   A0A2P6KZU1   J9K4V2   J9JPB3   A0A3B3CSI8   A0A2P6JUN9   A0A3B3BP63   C3XQU7   X1X8U1   A0A3B3DAU1   A0A087U2Y4   A0A2P6K7N8   A0A3P9J8W2   X1XFT7   A0A2P6KH06   C3ZDM5   H2L3J8   X1XNT2   C3Z903   A0A2P6K5J1   A0A3B3BZX4   A0A3B3DGN8   A0A087UF07   A0A2P6KFU8   A0A087TG20   J9JXH3   A0A146P3B3   C3YAI3   A0A2P6K3I2   A0A3B3BXK7   A0A3B3D1X1   J9L823   A0A3B3DGJ6   A0A087V185   A0A146P0B7   C3ZPQ0   C3ZQN5   A0A3B3C1F5   A0A146Q733   C3ZII5   A0A3P9JA95   C3ZDN1   A0A3P9M2M6   A0A3B3C2C9   C3ZDP1   C3ZDP0   A0A3B3DE58   A0A3B3I873  

PDB

5V3M     E-value=5.80515e-58,     Score=568

KEGG

101737758    no KO assigned | (RefSeq) zinc finger protein 600-like

GO

GO:0003676   GO:1900111   GO:0005634   GO:0046872   GO:0000976   GO:0003677   GO:0045892   GO:0045944   GO:0045893   GO:0043565   GO:0003700   GO:0008270   GO:0006357   GO:0000981   GO:0006355   GO:0010468   GO:0000979   GO:0030246   GO:0004559   GO:0006013   GO:0015923   GO:0006260  

Length:

387

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00125

Exp number, first 60 AAs:

0

Total prob of N-in:

0.03145

outside

1  -  387

 

 

Pi

205.599796

Theta

165.040545

Tajima's D

0.645645

CLR

0.096294

CSRT

0.561321933903305

Interpretation

Uncertain