SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06129
Pre Gene Modal
BGIBMGA001685
Annotation
PREDICTED:_zinc_finger_protein_600-like_[Bombyx_mori]
Full name
Zinc finger protein      
Transcription factor
Location in the cell
Nuclear   Reliability : 4.03
 

Sequence

CDS
ATGCATCTAACAGATCGAAAAAGACCTTATATTTGTGAAGTGTGTGATAAACGTTTTACAGAATATAGCAATTTAAAAATACATCGCAGAAAACATACAGAAGGAAAACCTTACGTATGTGAAGTATGTCAAAAGAGATTTTCCGATGCGAATAATTTAAAAACGCATTTATTAACACATACCGGAGAGAAACCTCATATTTGCGAAATGTGCAATAAGAGTTTTATACACACGGGCGATTTAAAAAGACATTTAAGAACACATACTGGAGAAAGACCCTATGTGTGTGAAGTTTGTGATAAAAGATTTTCAGATGCAAGTAATTTGAAAAGACACTTTAGAACGCATACCGGAGAAAAATCTTATGTTTGTAAAGTTTGTGATAAAAGTTTTGCGTGTAGGAGTACCTTGGAGAGACATCAAAAAACTCATACCGGAGAAAAACCTTTTAATTGTGAGACGTGTGATAAAACTTTTGCTCACACCGGTGAACTCAAAAGACATGTTAGGACACATACCGGCGAAAAGCCTTATTGTTGTGAGCTTTGCGATAAAAGCTTTGCACGGAAAAATACCTTGGATGTACACCTACGAACGCATACTGATGAAAAACCATATGTTTGTGAAGTGTGCGATAAGAGACTTGCGTTTGCTAGTAATTTGAAAACCCATTTAAGGACCCACACCGGCGAAAAACCTTATTCTTGTGAAGTGTGTGATAAAGGCTTTGCCCACACGGGTGACTTAAAAAGACATATGATAACACATACCAGAGAAAAGCCTTATGGTTGTAAACGATGTGATAAAAGTTTTACAAACCAGAGTGCCTTAGACAGACATCTGAGAATACATACTGCAGAAAAATCTTATGTTTGTGAAGTGTGCGATAAGATATTTTTAGATCCTAGCGATTTGAAAAAGCATTTAAGGACACATAACAAAGAAAAACCTTATGTTTGTAAAGTTTGCGATAAGAAGTTTTCCGTTGCTCGATATCTTAAAACGCATTTAAGGATACACACCAGAGAAAAACTGTATGTTTGTGAAGTGTGCGATAAAAAATTCTCTGTTGGTCGTTACTTGAAGATGCACCAAAGGACTCATAGCGGAGAAATACCATTTGTATGCGAAGTCGTGATGTCTGTAGGTACCAATAACCACTGA
Protein
MHLTDRKRPYICEVCDKRFTEYSNLKIHRRKHTEGKPYVCEVCQKRFSDANNLKTHLLTHTGEKPHICEMCNKSFIHTGDLKRHLRTHTGERPYVCEVCDKRFSDASNLKRHFRTHTGEKSYVCKVCDKSFACRSTLERHQKTHTGEKPFNCETCDKTFAHTGELKRHVRTHTGEKPYCCELCDKSFARKNTLDVHLRTHTDEKPYVCEVCDKRLAFASNLKTHLRTHTGEKPYSCEVCDKGFAHTGDLKRHMITHTREKPYGCKRCDKSFTNQSALDRHLRIHTAEKSYVCEVCDKIFLDPSDLKKHLRTHNKEKPYVCKVCDKKFSVARYLKTHLRIHTREKLYVCEVCDKKFSVGRYLKMHQRTHSGEIPFVCEVVMSVGTNNH

Summary

EC Number
2.1.1.-
EMBL
BABH01021013    ABLF02033404    ABLF02009642    ABLF02020710    ABLF02032781    ABLF02047065    + More
ABLF02063720    ABLF02038601    ABLF02029797    ABLF02029788    ABLF02038588    ABLF02038606    ABLF02038607    ABLF02020406    ABLF02024472    ABLF02025528    ABLF02025523    ABLF02038592    ABLF02005500    ABLF02005501    ABLF02009116    ABLF02009117    ABLF02009118    ABLF02009119    ABLF02060218    ABLF02063036    ABLF02066102    ABLF02066235    ABLF02017959    ABLF02024899    ABLF02011913    ABLF02020429    ABLF02025261    MWRG01015784    PRD24168.1    MWRG01023250    PRD22026.1    MWRG01023322    PRD22014.1    GG666620    EEN48291.1    MWRG01026172    PRD21467.1    GG666573    EEN53486.1    ABLF02030153    ABLF02009504    GG666451    EEN70065.1    ABLF02007945    ABLF02021897    ABLF02057411    GG666659    EEN45307.1    ABLF02040395    ABLF02022486    ABLF02022489    ABLF02022496    ABLF02022497    ABLF02022499    ABLF02022500    ABLF02063679    GG666494    EEN62760.1    MWRG01045277    PRD20076.1    MRZV01001663    PIK36521.1    ABLF02037187    EEN53483.1    GG666612    EEN48822.1    EEN48805.1    ABLF02009698    ABLF02018747    MWRG01030637    PRD21150.1    MWRG01025029    PRD21660.1    ABLF02039175    MWRG01013681    PRD24960.1    ABLF02030560    ABLF02030568    MWRG01003147    PRD31847.1    ABLF02014787    ABLF02011791    ABLF02011792    MWRG01157310    PRD17780.1    GG666456    EEN69542.1    ABLF02018325    KK117904    KFM71723.1    MWRG01021789    PRD22340.1    ABLF02029786    ABLF02029793    ABLF02029794    ABLF02048372    MWRG01012199    PRD25597.1    EEN48831.1    ABLF02003804    ABLF02003805    ABLF02003807    ABLF02004643    ABLF02004644    GG666598    EEN50915.1    MWRG01025419    PRD21595.1    KK119529    KFM75946.1    MWRG01013077    PRD25216.1    KK115052    KFM64059.1    ABLF02020230    ABLF02020231    GCES01147881    JAQ38441.1    EEN62731.1    MWRG01032674    PRD20891.1    ABLF02009695    ABLF02018750    ABLF02061073    ABLF02063523    KL819331    KFM83374.1    GCES01149080    JAQ37242.1    EEN45471.1    GG666662    EEN45081.1    GCES01134229    JAQ52093.1    GG666627    EEN47710.1    EEN48837.1    EEN48847.1    EEN48846.1   
Pfam
PF00096   zf-C2H2        + More
PF14291   DUF4371
PF12171   zf-C2H2_jaz
PF00078   RVT_1
PF13359   DDE_Tnp_4
PF05380   Peptidase_A17
Interpro
IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type       
IPR017114   YY-1-like       
IPR017126   Znf_PRDM12       
IPR017125   Znf_PRDM5-like       
IPR025398   DUF4371       
IPR022755   Znf_C2H2_jaz       
IPR003656   Znf_BED       
IPR001965   Znf_PHD       
IPR003604   Matrin/U1-like-C_Znf_C2H2       
IPR000477   RT_dom       
IPR011017   TRASH_dom       
IPR036397   RNaseH_sf       
IPR027806   HARBI1_dom       
IPR012337   RNaseH-like_sf       
IPR008042   Retrotrans_Pao       
SUPFAM
SSF57667   SSF57667        + More
SSF53098   SSF53098       
Gene 3D
PDB
5V3M     E-value=5.80515e-58,     Score=568

Ontologies

Topology

Length:
387
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00125
Exp number, first 60 AAs:
0
Total prob of N-in:
0.03145
outside
1  -  387
 
 

Population Genetic Test Statistics

Pi
205.599796
Theta
165.040545
Tajima's D
0.645645
CLR
0.096294
CSRT
0.561321933903305
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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