HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	5.4	3.0	0.46	28	1	23	271	293
2	11.5	4.1	0.0053	0.32	1	23	300	322
3	2.5	0.4	3.8	2.3e+02	1	23	326	348
4	2.3	5.5	4.2	2.5e+02	1	23	353	380
5	10.8	0.5	0.0086	0.52	2	23	385	407
6	7.2	0.2	0.12	7.2	3	21	421	439
7	4.9	0.3	0.65	39	2	23	477	499
8	5.5	3.0	0.42	25	2	23	515	536
9	22.0	0.2	2.4e-06	0.00014	1	23	541	563
10	13.0	0.7	0.0017	0.1	1	23	569	592
11	14.6	1.0	0.00055	0.033	1	20	598	617

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.46
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykC+dC k F +k+ ++rH   H
  KWMTBOMO06128 271 YKCEDCYKGFLHKEVYERHAVHH 293
                    9*********9999999997666 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.0053
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++C+ + k +++Lk+H  +H
  KWMTBOMO06128 300 YQCKICKIRTKKRYELKHHSAKH 322
                    9******************9998 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 3.8
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C +C+ +  ++s    H + H
  KWMTBOMO06128 326 YICRGCPFVTGSRSAAHIHGKYH 348
                    89*******99999988887777 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 4.2
                    EEETTTTEEE....SSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksF....krksnLkrHirt.H 23 
                    y+C++Cg+ F    + + ++++H+rt H
  KWMTBOMO06128 353 YTCGHCGEIFevvpRKNTSYMSHLRTkH 380
                    9******666333356777777777777 PP

  == domain 5  score: 10.8 bits;  conditional E-value: 0.0086
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +C  Cg sF +k  L+ H +  H
  KWMTBOMO06128 385 VCALCGHSFVSKKGLVLHTNFkH 407
                    7*****************98766 PP

  == domain 6  score: 7.2 bits;  conditional E-value: 0.12
                    ETTTTEEESSHHHHHHHHH CS
        zf-C2H2   3 CpdCgksFkrksnLkrHir 21 
                    C++C+ +F + + L +H++
  KWMTBOMO06128 421 CEECNIVFVSGHALDTHMS 439
                    ******************7 PP

  == domain 7  score: 4.9 bits;  conditional E-value: 0.65
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +C+ C++  ++   + rH r+ H
  KWMTBOMO06128 477 PCEQCDMELPNARRYDRHFRKlH 499
                    6*******************999 PP

  == domain 8  score: 5.5 bits;  conditional E-value: 0.42
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                     C++Cg++F+  s+Lk H+  H
  KWMTBOMO06128 515 MCEICGQMFRCMSLLKDHYDAH 536
                    6*****************8766 PP

  == domain 9  score: 22.0 bits;  conditional E-value: 2.4e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++Cgk+F+r+s L+ H r+H
  KWMTBOMO06128 541 FECGECGKRFPRRSRLVIHERVH 563
                    89*******************99 PP

  == domain 10  score: 13.0 bits;  conditional E-value: 0.0017
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    + C +Cg++F+   n+ rH+ + H
  KWMTBOMO06128 569 HSCAICGRRFTVYANMIRHRDSvH 592
                    68*****************98877 PP

  == domain 11  score: 14.6 bits;  conditional E-value: 0.00055
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHi 20 
                    + C+ Cgk+Fk+   L++Hi
  KWMTBOMO06128 598 FDCNLCGKKFKQLCGLRTHI 617
                    78*****************8 PP