HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	16.4	3.0	0.00015	0.0089	2	23	141	163
2	7.2	1.2	0.12	7.3	2	21	169	188
3	4.7	3.5	0.74	44	1	20	211	230
4	17.6	2.3	5.9e-05	0.0035	1	23	239	262
5	8.0	2.7	0.067	4	2	23	270	291
6	23.7	1.5	6.9e-07	4.1e-05	2	23	297	318
7	11.2	1.3	0.0066	0.39	2	23	325	347
8	8.7	0.5	0.04	2.4	1	23	354	376
9	4.1	0.1	1.1	68	2	23	382	403
10	21.4	4.0	3.8e-06	0.00023	1	23	408	431

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 0.00015
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +C+dCg+ Fk+k  L++H ++ H
  KWMTBOMO08696 141 ECHDCGELFKSKCKLRVHWKRaH 163
                    7*******************999 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.12
                    EETTTTEEESSHHHHHHHHH CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHir 21 
                    kC+ C++ Fk+   ++ H +
  KWMTBOMO08696 169 KCERCKRQFKSFKAYNLHKK 188
                    8*************999976 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.74
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHi 20 
                    ++C+dC+++  r  ++++H+
  KWMTBOMO08696 211 FYCKDCDYKSIRVKDMMNHY 230
                    89*****9999999999996 PP

  == domain 4  score: 17.6 bits;  conditional E-value: 5.9e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C++C k+F++ s+L +H+   H
  KWMTBOMO08696 239 FTCSICLKTFTQHSSLSSHQENvH 262
                    89*****************98877 PP

  == domain 5  score: 8.0 bits;  conditional E-value: 0.067
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C++Cgk  k +  + +H++ H
  KWMTBOMO08696 270 TCHVCGKYLKGRNKFYKHLKGH 291
                    7******************998 PP

  == domain 6  score: 23.7 bits;  conditional E-value: 6.9e-07
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C +C+k Fk+k  Lk+H+++H
  KWMTBOMO08696 297 QCVICNKIFKTKKTLKVHMQRH 318
                    7********************9 PP

  == domain 7  score: 11.2 bits;  conditional E-value: 0.0066
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                     C++Cg ++ + s+L++H r  H
  KWMTBOMO08696 325 SCEICGSRYYTISDLCNHKRNvH 347
                    6*******************988 PP

  == domain 8  score: 8.7 bits;  conditional E-value: 0.04
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykC+ C ++ + ++  k+H+ +H
  KWMTBOMO08696 354 YKCDLCEYVANKNETIKKHRAKH 376
                    9*******************999 PP

  == domain 9  score: 4.1 bits;  conditional E-value: 1.1
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C +Cg    + + +  H+++H
  KWMTBOMO08696 382 PCLVCGVFLENEETYLLHQKRH 403
                    699******************9 PP

  == domain 10  score: 21.4 bits;  conditional E-value: 3.8e-06
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C+ C ksF rk  L+ H+r+ H
  KWMTBOMO08696 408 FQCTLCEKSFYRKRYLNDHMRKkH 431
                    89********************99 PP