HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	7.7	1.3	0.083	5	1	23	204	226
2	12.8	5.2	0.0021	0.12	1	23	233	256
3	3.5	1.1	1.7	1e+02	1	23	260	282
4	13.6	2.4	0.0011	0.068	1	23	287	310
5	10.8	0.2	0.0084	0.5	1	23	314	337
6	11.2	0.1	0.0065	0.39	3	20	354	371
7	18.0	0.6	4.4e-05	0.0026	2	23	384	405
8	17.8	0.1	5.1e-05	0.0031	3	23	426	447
9	20.0	0.3	1e-05	0.0006	2	23	457	478
10	18.8	1.8	2.4e-05	0.0014	1	23	484	506
11	19.4	2.2	1.6e-05	0.00098	3	23	513	534
12	17.4	2.0	7.1e-05	0.0043	1	23	540	563

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.083
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC+ C + F     +++H ++H
  KWMTBOMO06120 204 FKCNLCFRGFVFEQAYVNHKMKH 226
                    8*******************999 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.0021
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++Cp+C++ ++++ +L++H  t H
  KWMTBOMO06120 233 HQCPVCKMHYRTQRHLRVHSVTaH 256
                    79*****************87777 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 1.7
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++Cg    +  + + H + H
  KWMTBOMO06120 260 YRCNKCGTISHTMNQARDHEKWH 282
                    9******9877777777776666 PP

  == domain 4  score: 13.6 bits;  conditional E-value: 0.0011
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C  Cg++F+ + ++ +H r+ H
  KWMTBOMO06120 287 YECLLCGMKFRKPTSYLTHKRKrH 310
                    99********************99 PP

  == domain 5  score: 10.8 bits;  conditional E-value: 0.0084
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y C+ Cg+sF   + L  H  + H
  KWMTBOMO06120 314 YICNLCGESFIGAHGLLMHKTKaH 337
                    89*****************98888 PP

  == domain 6  score: 11.2 bits;  conditional E-value: 0.0065
                    ETTTTEEESSHHHHHHHH CS
        zf-C2H2   3 CpdCgksFkrksnLkrHi 20 
                    C +C+ +F++ +  krH+
  KWMTBOMO06120 354 CAECDIRFTTLEAWKRHM 371
                    99***************9 PP

  == domain 7  score: 18.0 bits;  conditional E-value: 4.4e-05
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    kC++C+ ++++ +++++H++ H
  KWMTBOMO06120 384 KCKICNIKYSSADSFTVHMKEH 405
                    8*******************99 PP

  == domain 8  score: 17.8 bits;  conditional E-value: 5.1e-05
                    ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                    C+ Cg sF +ks L++Hi++ H
  KWMTBOMO06120 426 CDQCGGSFANKSKLQAHINRmH 447
                    ********************99 PP

  == domain 9  score: 20.0 bits;  conditional E-value: 1e-05
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C++Cgk+F+++  L+ H+r+H
  KWMTBOMO06120 457 VCEVCGKKFSSNAFLRYHQRIH 478
                    7********************9 PP

  == domain 10  score: 18.8 bits;  conditional E-value: 2.4e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C+ C+++F+ k +L+ H rtH
  KWMTBOMO06120 484 YSCETCSRRFTEKNQLRIHVRTH 506
                    89********************9 PP

  == domain 11  score: 19.4 bits;  conditional E-value: 1.6e-05
                    ET.TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 Cp.dCgksFkrksnLkrHirtH 23 
                    C  +Cg+sF++k  L+rH+rtH
  KWMTBOMO06120 513 CCiVCGRSFSQKPALNRHYRTH 534
                    5559*****************9 PP

  == domain 12  score: 17.4 bits;  conditional E-value: 7.1e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C +C+k+F+++ +++ H +t H
  KWMTBOMO06120 540 YECRYCSKKFSQSNSMNLHVKTiH 563
                    99********************99 PP