HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	12.4	1.8	0.0027	0.16	1	23	172	194
2	5.5	0.0	0.4	24	1	23	201	224
3	5.8	2.2	0.34	20	3	23	253	274
4	13.8	0.1	0.00098	0.058	1	21	284	304
5	9.4	0.0	0.023	1.4	3	23	317	338
6	18.2	2.5	3.9e-05	0.0023	2	23	345	367
7	18.4	1.2	3.4e-05	0.002	1	23	381	403
8	25.5	0.3	1.9e-07	1.1e-05	1	23	409	431
9	23.0	0.8	1.2e-06	6.9e-05	1	23	437	459
10	15.1	1.1	0.00038	0.023	1	23	465	488

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.0027
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykC++C k F +   +++H+ +H
  KWMTBOMO06092 172 YKCEKCYKGFMTDVTYTNHMIRH 194
                    9*********************9 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.4
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C++Cg +  +  +L+ H  + H
  KWMTBOMO06092 201 HECGICGIRRASVRELRLHAASaH 224
                    78********9*******998877 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.34
                    ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                    Cp C+k+F  +  Lk H+++ H
  KWMTBOMO06092 253 CPLCHKRFLGRLGLKMHMKRaH 274
                    *******************999 PP

  == domain 4  score: 13.8 bits;  conditional E-value: 0.00098
                    EEETTTTEEESSHHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHir 21 
                    ++C++C+  F++ + L+rH++
  KWMTBOMO06092 284 HVCDGCDVNFNSEDALERHRS 304
                    79*****************86 PP

  == domain 5  score: 9.4 bits;  conditional E-value: 0.023
                    ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                    C +Cg  F + ++L+ H  + H
  KWMTBOMO06092 317 CAECGFGFQTEELLQEHVDSvH 338
                    9****************98877 PP

  == domain 6  score: 18.2 bits;  conditional E-value: 3.9e-05
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    kC++C+k F +k  L +Hi++ H
  KWMTBOMO06092 345 KCSKCDKNFANKRTLSKHIQRyH 367
                    7********************99 PP

  == domain 7  score: 18.4 bits;  conditional E-value: 3.4e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C+ Cg ++++  +L +H+rtH
  KWMTBOMO06092 381 YVCEMCGTRCSSAVSLLNHQRTH 403
                    9*********************9 PP

  == domain 8  score: 25.5 bits;  conditional E-value: 1.9e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+CpdC+k+F+ +  L+ HirtH
  KWMTBOMO06092 409 YQCPDCPKRFSVSQGLRIHIRTH 431
                    9*********************9 PP

  == domain 9  score: 23.0 bits;  conditional E-value: 1.2e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC+ C+k Fk+k  L+rH r+H
  KWMTBOMO06092 437 FKCTNCPKAFKNKAALNRHNRVH 459
                    8********************99 PP

  == domain 10  score: 15.1 bits;  conditional E-value: 0.00038
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y Cp+C k F+++ ++k H +t H
  KWMTBOMO06092 465 YACPHCLKAFSQSNSMKLHVSTvH 488
                    88*******************999 PP