HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	10.3	5.4	0.013	0.77	1	23	279	301
2	1.7	2.3	6.5	3.9e+02	1	23	308	330
3	5.8	0.9	0.34	20	1	23	334	357
4	5.9	3.9	0.31	19	1	23	364	386
5	18.2	0.0	3.9e-05	0.0023	2	23	393	414
6	12.2	0.6	0.0032	0.19	1	23	420	442
7	15.0	1.6	0.00041	0.025	1	21	448	468
8	18.4	0.5	3.3e-05	0.002	1	23	481	504
9	10.1	0.1	0.014	0.85	2	23	511	533
10	21.9	3.6	2.6e-06	0.00016	1	23	542	564
11	17.3	1.3	7.5e-05	0.0045	1	23	570	593

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.013
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C+ C k F+    Lk+H+ +H
  KWMTBOMO06089 279 YHCHLCFKGFNFEVKLKNHMEKH 301
                    89*******************99 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 6.5
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C +C++  +++++  +H  +H
  KWMTBOMO06089 308 FECAVCHMYLPTSYSHSVHTLIH 330
                    89*****7777766666666555 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.34
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C  Cg +  +k + ++H+r+ H
  KWMTBOMO06089 334 YECVQCGIRMIDKNSIVHHYRSkH 357
                    99*******************999 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.31
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++Cgk  +++   + H+r H
  KWMTBOMO06089 364 FTCTICGKISNNSKTHRGHLRNH 386
                    89************999999995 PP

  == domain 5  score: 18.2 bits;  conditional E-value: 3.9e-05
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C+ Cgk+F ++++L  H+ +H
  KWMTBOMO06089 393 ECEQCGKTFINNDSLAEHLLIH 414
                    5******************999 PP

  == domain 6  score: 12.2 bits;  conditional E-value: 0.0032
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C+ Cg +F+++ + k H  +H
  KWMTBOMO06089 420 YECELCGARFRTRNQVKYHELKH 442
                    99*****************9999 PP

  == domain 7  score: 15.0 bits;  conditional E-value: 0.00041
                    EEETTTTEEESSHHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHir 21 
                    y+C +C+ +Fk++++Lk+H+ 
  KWMTBOMO06089 448 YYCVECDSRFKSPYSLKQHLT 468
                    89*****************86 PP

  == domain 8  score: 18.4 bits;  conditional E-value: 3.3e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C+ C+k+F++   L +H+ + H
  KWMTBOMO06089 481 HRCGTCDKRFSTAGALATHRAVrH 504
                    79*****************99888 PP

  == domain 9  score: 10.1 bits;  conditional E-value: 0.014
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                     C +Cg    + s+L +H r  H
  KWMTBOMO06089 511 ACAECGAALASASSLHKHVRAvH 533
                    6******************9888 PP

  == domain 10  score: 21.9 bits;  conditional E-value: 2.6e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+ Cgk F+++s L++H rtH
  KWMTBOMO06089 542 HVCHTCGKAFRSSSVLTNHVRTH 564
                    79********************9 PP

  == domain 11  score: 17.3 bits;  conditional E-value: 7.5e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    + C++C+++F+++  +++H+r  H
  KWMTBOMO06089 570 FSCEVCSRRFSQRTAMRTHLRLvH 593
                    89*******************999 PP