Silkworm Genome Informatics Database

Gene

KWMTBOMO06089

Annotation

PREDICTED:_zinc_finger_protein_699-like_isoform_X4_[Bombyx_mori]

Location

Bomo_Chr11(-):201310-212194 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.656

CDS

ATGCAAGAAACTACCGTAGAGGATGCAGATAAATATAAATTGGATTTTGAATTAGACAAACAGATATGCAGATGCTGTTTGAGCACAAACAGGCGCATGGAAGGTGTACATAAGTACAACACGTATATTTACGATTTAGCATCCATAGAGGTATCGGAGTCAGACGGTCTCCCTCAGTGGATCTGCTGGGAGTGCATAACTTTATTAAGCAAATCAGTAAAGTTCAAATCTAAAATACTCAAAGCTCATGGTGCGCTTTTTGAGTACTTGAGCAGATGCGCACCGTTTCCAATTGATGCACGTGATCAAGAACTGAGTGAGTATGCTGGACCGTACTTGGAAAGATCATCGGTGCTCACCTTCAATCATAGCGGCATAGGTAGAACCGGATACCATGAAGATTTACAGCACGAAAAACTGACATCACCTTCGGAAATACAACTGTTTGTCCTGCCAATGCTACCGATTAAATATGAGGAGGAAGTCAAAGAAGAGAGTTTCTATTCGGATTATGAGGATAATATAACAGTCGAGCAGATAAGAGCAAACGTTGAGGAGGTGGAGAAGTTTTCAGAGGAGGACCTGAATGATTTTCTAGATGAGAAGGAGATAGAGTTAAGGGAGGAATCCGGGAAAAAGAGATCGAAAAAGAAAGATATCCGAATCAAGAAGAGAAGTAGGGTCAAACCGAGTTCAGAGGAGCAGGAGCCCCTCAAGTCGTCCATAAGGAAACCCGTGGACCTGGACCCGGAGAAGATCAGGATAATAACTCTGAACCCCGAGGAGCAGATAAAGGCCAAAGAGCTAGAAACCACAAAGAACCTCAAGATGCCGTACCACTGCCATCTGTGTTTCAAGGGCTTCAACTTCGAAGTGAAACTGAAGAACCACATGGAGAAACACAGCCCGTCCCGGGGCACGTTTGAGTGCGCCGTGTGTCACATGTACCTGCCGACTTCGTACAGCCACAGCGTCCACACGCTCATACACACGCGCAGGTACGAGTGCGTGCAGTGCGGGATACGGATGATAGACAAGAATAGCATCGTTCATCATTACCGGTCCAAACACGAAGGACTATCTTCGGTCTTCACCTGCACTATTTGCGGGAAGATTTCCAATAACAGCAAGACGCACCGCGGCCATCTGAGGAACCACCACGGCGGCTCGCGGCCCGAGTGCGAGCAGTGCGGGAAGACCTTCATAAACAACGACTCGCTGGCGGAGCACCTGCTTATACACAAGGGCGTTAAGAACTACGAGTGCGAGCTGTGCGGCGCGCGCTTCAGGACCAGGAACCAGGTCAAGTACCACGAGCTGAAGCACTCCTCCACCAGGGATTACTACTGCGTCGAGTGCGACAGCAGGTTCAAATCTCCGTACAGCCTCAAGCAGCACTTAACCAAGAGTTTGAAGCACAGAGACTTGGACAGCCTCAAACACAGATGCGGCACGTGCGACAAGCGGTTCAGCACGGCGGGCGCGCTGGCCACGCACCGCGCCGTGCGGCACGAGGGCGCGCGCCCCCACGCCTGCGCGGAGTGCGGCGCCGCCCTCGCCTCCGCCTCCTCGCTGCACAAGCACGTGCGCGCCGTGCACCGCGGGGACCGGCCCCCCGCCGTGCACGTGTGCCACACCTGCGGGAAGGCCTTCAGGAGTTCAAGTGTACTGACGAACCACGTGCGGACGCACACTGGAGAGAAGCCCTTCTCGTGCGAAGTGTGCTCGCGACGGTTCTCCCAGCGGACGGCCATGAGGACACATCTGAGACTGGTTCACTTGTCGAGGAATTGA

Protein

MQETTVEDADKYKLDFELDKQICRCCLSTNRRMEGVHKYNTYIYDLASIEVSESDGLPQWICWECITLLSKSVKFKSKILKAHGALFEYLSRCAPFPIDARDQELSEYAGPYLERSSVLTFNHSGIGRTGYHEDLQHEKLTSPSEIQLFVLPMLPIKYEEEVKEESFYSDYEDNITVEQIRANVEEVEKFSEEDLNDFLDEKEIELREESGKKRSKKKDIRIKKRSRVKPSSEEQEPLKSSIRKPVDLDPEKIRIITLNPEEQIKAKELETTKNLKMPYHCHLCFKGFNFEVKLKNHMEKHSPSRGTFECAVCHMYLPTSYSHSVHTLIHTRRYECVQCGIRMIDKNSIVHHYRSKHEGLSSVFTCTICGKISNNSKTHRGHLRNHHGGSRPECEQCGKTFINNDSLAEHLLIHKGVKNYECELCGARFRTRNQVKYHELKHSSTRDYYCVECDSRFKSPYSLKQHLTKSLKHRDLDSLKHRCGTCDKRFSTAGALATHRAVRHEGARPHACAECGAALASASSLHKHVRAVHRGDRPPAVHVCHTCGKAFRSSSVLTNHVRTHTGEKPFSCEVCSRRFSQRTAMRTHLRLVHLSRN

Uniprot

H9IWS3 A0A0N1ICJ9 A0A0N1IFW2 A0A3Q4GEH6

Pubmed

19121390 26354079 25186727

EMBL

BABH01020957 KQ458725 KPJ05382.1 KQ460140 KPJ17511.1

Proteomes

UP000005204 UP000053268 UP000053240 UP000261580

PRIDE

H9IWS3

Pfam

PF00096   zf-C2H2        + More
PF07776   zf-AD
PF12171   zf-C2H2_jaz

Interpro

IPR012934   Znf_AD        + More
IPR036236   Znf_C2H2_sf
IPR013087   Znf_C2H2_type
IPR022755   Znf_C2H2_jaz

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

H9IWS3 A0A0N1ICJ9 A0A0N1IFW2 A0A3Q4GEH6

PDB

5V3M E-value=2.56921e-26, Score=297

KEGG

101740040 no KO assigned | (RefSeq) zinc finger protein 879-like

GO

GO:0008270 GO:0003676 GO:0005634 GO:0046872 GO:0003924 GO:0016020 GO:0003677 GO:0000723 GO:0006260

Length:

597

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000560000000000001

Exp number, first 60 AAs:

0.0002

Total prob of N-in:

0.00169

outside

1 - 597

Pi

26.192861

Theta

22.925338

Tajima's D

-0.942061

CLR

25.316351

CSRT

0.142392880355982

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics