HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	15.3	3.8	0.00033	0.02	1	23	90	113
2	13.9	2.6	0.00087	0.052	3	23	122	143
3	6.1	5.2	0.28	17	2	23	151	173
4	14.4	0.1	0.00064	0.038	2	21	181	200
5	20.8	3.1	5.8e-06	0.00035	1	23	210	233
6	12.0	6.0	0.0036	0.21	1	23	239	262
7	17.5	0.3	6.6e-05	0.004	3	23	271	291
8	9.8	1.6	0.017	1	2	23	299	321
9	16.8	2.6	0.00011	0.0064	2	23	328	350
10	16.0	3.9	0.00019	0.011	1	23	360	382

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 0.00033
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y C++C+k Fk+  nL  H  + H
  KWMTBOMO06087  90 YICHKCNKEFKNYQNLYLHTTRvH 113
                    89*****************99988 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 0.00087
                    ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                    C++C+k+Fk+k+ L  H    H
  KWMTBOMO06087 122 CDICDKTFKNKHYLYMHKINkH 143
                    *****************88777 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.28
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +C  C   Fk++  L+ H ++ H
  KWMTBOMO06087 151 YCQFCLHEFKTRKALQMHVKKiH 173
                    799*****************999 PP

  == domain 4  score: 14.4 bits;  conditional E-value: 0.00064
                    EETTTTEEESSHHHHHHHHH CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHir 21 
                    kC +Cgk F  ++ L+ H+ 
  KWMTBOMO06087 181 KCVECGKEFQVPYKLRYHME 200
                    8*****************95 PP

  == domain 5  score: 20.8 bits;  conditional E-value: 5.8e-06
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    + C  C k+Fk+  nLkrH++t H
  KWMTBOMO06087 210 FICQLCQKPFKNHLNLKRHMQTqH 233
                    78********************99 PP

  == domain 6  score: 12.0 bits;  conditional E-value: 0.0036
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C  C+++Fk+++++krH    H
  KWMTBOMO06087 239 HPCVFCPMTFKSRHHMKRHVLNiH 262
                    68*****************98877 PP

  == domain 7  score: 17.5 bits;  conditional E-value: 6.6e-05
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    Cp+C k Fk+   L+ H+++H
  KWMTBOMO06087 271 CPECQKEFKNDQYLREHMQVH 291
                    *******************99 PP

  == domain 8  score: 9.8 bits;  conditional E-value: 0.017
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    kC+ C+k F +   Lk+H ++ H
  KWMTBOMO06087 299 KCELCDKYFHSAIRLKKHKKIvH 321
                    8******************9988 PP

  == domain 9  score: 16.8 bits;  conditional E-value: 0.00011
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +C++C+k F +++ L+rH +  H
  KWMTBOMO06087 328 RCEKCDKEFAHPHYLTRHKNAvH 350
                    8*****************98777 PP

  == domain 10  score: 16.0 bits;  conditional E-value: 0.00019
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++Cgk+Fk k  L +H+++H
  KWMTBOMO06087 360 HECEKCGKKFKLKKYLSNHLQRH 382
                    78********************9 PP