Silkworm Genome Informatics Database

Gene

KWMTBOMO06087

Pre Gene Modal

BGIBMGA001720

Annotation

PREDICTED:_zinc_finger_protein_224-like_[Amyelois_transitella]

Location

Bomo_Chr11(+):178525-182314 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.411

CDS

ATGGATTTCTCAAACTCCGTAACTCCTCAACTGCCGATGGCCATAAAACAAGAGATCATTCCACCGGATCCGCACCAGCACCCAAGCCAACCACCTTCCATTTCCGAGTCGACTCTGCCACAACCGCACGCCCTGAAGAAACCCAAAGACGAGGTGGTTAAATTTATAAGCGTAAACAGCGACGCGCTGACCGAGGAGCAGCGCGCCATGTACCAGTCGGTGCTGTCGACGTGGAAGCCAATAATGTTTCCGAAAAGCGAAAAGCGATATATCTGTCATAAATGCAATAAAGAATTCAAGAATTACCAGAACCTGTACCTGCACACGACGAGAGTGCACTCGACCGAGGAGGCGGCGGTGCTGTGCGACATATGCGACAAGACGTTCAAGAATAAACACTATTTGTACATGCACAAAATTAATAAGCATTACTCCGAAATTGAGAAATGCTACTGTCAGTTCTGCTTGCACGAGTTCAAGACGAGGAAGGCCCTCCAAATGCACGTCAAGAAAATCCATCCGAACACGTTACCGGAGCTGAAGTGCGTGGAGTGCGGCAAGGAATTCCAGGTGCCCTACAAGCTGCGGTATCACATGGAGTCTTGCATCACATCGAACAGGGAGAAGTTCATATGTCAATTGTGTCAGAAGCCCTTTAAAAATCATTTGAATTTGAAACGCCACATGCAGACCCAGCACACGCCAGTCGAGAGACACCCCTGCGTGTTTTGTCCGATGACCTTCAAATCGCGGCATCATATGAAGAGGCACGTCCTAAACATCCATCCGCCTTTAGAGTCGAAAGTTAACTGTCCGGAATGTCAAAAGGAATTCAAGAACGACCAGTACCTCCGTGAGCACATGCAAGTGCATTCATCGGCCGATTCTAAAGTTAAATGCGAGCTGTGCGATAAATACTTTCATTCAGCGATACGCTTGAAGAAGCACAAGAAGATCGTGCATCCGACCAAACCGAAACTGCGCTGTGAAAAGTGCGACAAGGAATTCGCGCATCCCCATTACTTGACGCGCCACAAGAACGCGGTGCACATGGAGATCGACGAGAGCAACTACGAGCACGAGTGCGAGAAGTGCGGGAAGAAGTTCAAATTAAAGAAATACTTGAGCAACCACCTTCAGAGGCACGAGCAGCAACAGATGAAGAGGATCTCGAGAATGGTCAAAACCGTCATAGGTGAAGGCGGTGAACCGAATGTCGTCAAGAAACGGGGACGCCCGAGGAAGCAACGGGTCGAGATCGAGTTCATAAAGTGCGAGCCGGTCTCCAGCAGTGACTCCGACGAGACGGACTCCGAGTCGGAGTGA

Protein

MDFSNSVTPQLPMAIKQEIIPPDPHQHPSQPPSISESTLPQPHALKKPKDEVVKFISVNSDALTEEQRAMYQSVLSTWKPIMFPKSEKRYICHKCNKEFKNYQNLYLHTTRVHSTEEAAVLCDICDKTFKNKHYLYMHKINKHYSEIEKCYCQFCLHEFKTRKALQMHVKKIHPNTLPELKCVECGKEFQVPYKLRYHMESCITSNREKFICQLCQKPFKNHLNLKRHMQTQHTPVERHPCVFCPMTFKSRHHMKRHVLNIHPPLESKVNCPECQKEFKNDQYLREHMQVHSSADSKVKCELCDKYFHSAIRLKKHKKIVHPTKPKLRCEKCDKEFAHPHYLTRHKNAVHMEIDESNYEHECEKCGKKFKLKKYLSNHLQRHEQQQMKRISRMVKTVIGEGGEPNVVKKRGRPRKQRVEIEFIKCEPVSSSDSDETDSESE

Uniprot

H9IWT7 A0A2H1VXV6 A0A2A4K638 A0A2H1VAW2 A0A212F175 A0A0L7LA05 + More
A0A1E1W836 A0A0N1I5U8 A0A0N0PDL0

Pubmed

19121390 22118469 26227816 26354079

EMBL

BABH01020955 ODYU01005123 SOQ45677.1 NWSH01000089 PCG79701.1 ODYU01001576 + More
SOQ37990.1 AGBW02010936 OWR47495.1 JTDY01002011 KOB72333.1 GDQN01007906 JAT83148.1 KQ458725 KPJ05383.1 KQ460140 KPJ17510.1

Proteomes

UP000005204 UP000218220 UP000007151 UP000037510 UP000053268 UP000053240 + More

PRIDE

H9IWT7

Pfam

PF00096 zf-C2H2 + More
PF05605 zf-Di19

Interpro

IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf
IPR008598   Di19_Zn_binding_dom
IPR006642   Znf_Rad18_put

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

H9IWT7 A0A2H1VXV6 A0A2A4K638 A0A2H1VAW2 A0A212F175 A0A0L7LA05 + More
A0A1E1W836 A0A0N1I5U8 A0A0N0PDL0

PDB

5WJQ E-value=1.11007e-12, Score=178

KEGG

101739905 no KO assigned | (RefSeq) zinc finger protein Gfi-1b-like

GO

GO:0003676 GO:0006281 GO:0003700 GO:0003677 GO:0046872 GO:0005874 GO:0007017 GO:0003924 GO:0016020 GO:0000723 GO:0005634 GO:0006260

Length:

441

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00328

outside

1 - 441

Pi

36.619146

Theta

51.062792

Tajima's D

-0.64869

CLR

0.714573

CSRT

0.211939403029849

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics