HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	11.7	1.9	0.0046	0.27	2	23	242	264
2	14.2	6.5	0.00074	0.044	1	23	270	292
3	4.0	0.8	1.3	76	1	23	297	319
4	10.2	1.3	0.013	0.78	1	12	323	334
5	2.1	0.9	5.2	3.1e+02	3	23	411	432
6	17.6	2.3	6.1e-05	0.0037	1	23	436	459
7	15.5	1.2	0.00027	0.016	3	23	481	501
8	21.0	0.3	5e-06	0.0003	1	23	507	529
9	11.7	3.8	0.0045	0.27	1	23	535	557
10	17.7	0.2	5.8e-05	0.0035	1	23	563	586

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0046
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    kC+ C k F + + LkrH +  H
  KWMTBOMO06085 242 KCEQCYKGFIHEDTLKRHVKDkH 264
                    7*****************99877 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 0.00074
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++C+ +Fk +snL  H+r+H
  KWMTBOMO06085 270 HVCEYCKFRFKERSNLSGHYRRH 292
                    79********************6 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 1.3
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C  Cg + + +++ ++H ++H
  KWMTBOMO06085 297 YICRACGITTRMREHAVQHSKMH 319
                    88*****************9999 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 0.013
                    EEETTTTEEESS CS
        zf-C2H2   1 ykCpdCgksFkr 12 
                    ++C++Cgk+F+ 
  KWMTBOMO06085 323 FECKYCGKVFNK 334
                    89********86 PP

  == domain 5  score: 2.1 bits;  conditional E-value: 5.2
                    ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                    C +C ++F     L+ H    H
  KWMTBOMO06085 411 CVHCAQRFDGERALRDHVLAvH 432
                    99***************87666 PP

  == domain 6  score: 17.6 bits;  conditional E-value: 6.1e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y C  C+k+F++ s L++H+   H
  KWMTBOMO06085 436 YSCAQCNKTFSHESKLNNHLLEkH 459
                    89******************9888 PP

  == domain 7  score: 15.5 bits;  conditional E-value: 0.00027
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C++Cgk   ++++++ H+r+H
  KWMTBOMO06085 481 CHICGKIIADQYHMVYHQRIH 501
                    ********************9 PP

  == domain 8  score: 21.0 bits;  conditional E-value: 5e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++C+k+F+ +++L++H r+H
  KWMTBOMO06085 507 YACSECPKRFRMPEQLQNHVRIH 529
                    88*******************99 PP

  == domain 9  score: 11.7 bits;  conditional E-value: 0.0045
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC++C+ +Fk+   + rH  +H
  KWMTBOMO06085 535 FKCKYCPNTFKTYPAMSRHHLVH 557
                    8*******************999 PP

  == domain 10  score: 17.7 bits;  conditional E-value: 5.8e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    + C++C+k F ++ ++k+H rt H
  KWMTBOMO06085 563 HACSVCDKGFATSAEMKAHVRTvH 586
                    56********************99 PP