HMM length of domain: 29 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	47.0	9.2	2.4e-16	2e-12	1	28	369	396
2	48.1	7.9	1.1e-16	9.3e-13	1	29	413	441
3	48.5	4.2	8e-17	6.8e-13	1	29	881	909
4	55.4	8.3	5.6e-19	4.7e-15	1	29	922	950
5	0.9	0.2	0.063	5.3e+02	22	29	967	974
6	51.5	5.6	9e-18	7.6e-14	1	29	1008	1036

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 2.4e-16
        zf-C2HC   1 kCPtpGCdGsGHvkGkyasHrslsgCPl 28 
                    kCPtpGC+G+GHv+G y++HrslsgCP+
  KWMTBOMO05846 369 KCPTPGCNGQGHVTGLYTHHRSLSGCPR 396
                    7**************************6 PP

  == domain 2  score: 48.1 bits;  conditional E-value: 1.1e-16
        zf-C2HC   1 kCPtpGCdGsGHvkGkyasHrslsgCPla 29 
                    kCPtpGC+G+GHv++++++HrslsgCP a
  KWMTBOMO05846 413 KCPTPGCNGRGHVSSNRSTHRSLSGCPTA 441
                    7**************************86 PP

  == domain 3  score: 48.5 bits;  conditional E-value: 8e-17
        zf-C2HC   1 kCPtpGCdGsGHvkGkyasHrslsgCPla 29 
                    +CP++ CdGsGH++G++asHrslsgCP+a
  KWMTBOMO05846 881 QCPVEDCDGSGHISGHFASHRSLSGCPRA 909
                    6**************************97 PP

  == domain 4  score: 55.4 bits;  conditional E-value: 5.6e-19
        zf-C2HC   1 kCPtpGCdGsGHvkGkyasHrslsgCPla 29 
                    kCPtpGCdGsGHv+G+y+sHrslsgCP+a
  KWMTBOMO05846 922 KCPTPGCDGSGHVTGNYSSHRSLSGCPRA 950
                    7**************************97 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.063
        zf-C2HC  22 slsgCPla 29 
                    s+sgCP+a
  KWMTBOMO05846 967 SASGCPIA 974
                    79****97 PP

  == domain 6  score: 51.5 bits;  conditional E-value: 9e-18
        zf-C2HC    1 kCPtpGCdGsGHvkGkyasHrslsgCPla 29  
                     +CPtpGCdGsGH++G + +HrslsgCP+a
  KWMTBOMO05846 1008 NCPTPGCDGSGHINGSFLTHRSLSGCPVA 1036
                     5**************************97 PP