SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05846  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA006962
Annotation
PREDICTED:_myelin_transcription_factor_1_[Bombyx_mori]
Location
Bomo_Chr10(+):12424671-12457265      View in EpiBrowser
Transcription factor
zf-C2HC
Location in the cell
Nuclear   Reliability : 4.044
 

Sequence

CDS
ATGTATATCAGAGCGTATGGAATTTCGAAAACTGTGCTTAGAGCGGTCATTTGTTACAGGAGTACACCGCTGACGGCTCAAACCGGAATCACGCAAATCAACAAGAGGCGACTCGAGTTCGGTGTCGATGTAGAAACTTTCAAAATAGGAGAGAGGCGTATAGAGCGTACCAACAGTGAAGCTTCCATGGAGGACGAAGACGTGATCGGGAAACGCCGACGGAGACTACTGGACGATGAGAGACGGGACGAACTCGAACCTCGACGCCGCCCATTACCAGTGCACCGACCTTACACCACTCGGCAACCTGACCAGGATGAAGAGACACTCATCAAAGAAACACAAGCTGCCTTAAAAACGCTCTCAGGAAGCTGGACTCGTGATCATACGATTGTACACACCGGTGACGTCACCGATGAAGCGAACGGATTCGAAAACTTATTTGCTGACGGAAGGCAAGAACATAATAATATGTTGCCGTCCCCGCCCTCACCGTCTTCCGAAAGCAATGACACCACACAAAAAAGTTTTGCTATGCGGTACGAACAGCAGGAGCATAACATTAACGGTGTCAATGGAAATATTGAATTGAATACGTGCGGAGAGATTGCTGAAGATCAAGAAAGCAGACATTCTAATTACGATGGAACTAATTTCGATGAGCTCGGTGATTCGTCTTCCAATGAACTCGAAATAGATATGTCAGATCGATTTGACGATAAATTCGACGACGATAGAGAATTTAAATTCAAACGTAAAGGCGATATTGTGTCCGTCAATAAGCAGTCTCTGTACAACGCTTACAAAGCGGCGACGGCTGCACTGCCATATACCACGCAATCGGCTTTCAAGCCTCCCGCTGAAGTGAAACATAGGCTACACGGACCTACACTGCCGAGCGAACCTTTCGGGGGGTATTCCAATGATCACGAGAAGAGTTCAGTGAACCGTGCTTCGAAACAGTATACAGTGCTACAGCCGGCAGGAGTGGGGTCACGCGCGGCCACGGCGCTGCAAGAAGCCAGGGCAGTTCCAACCGCGCAGCCGGCACGAGATTCGCGACCGCTCACTGCACTCTCGCCGCCCGTCGTCAGAGAAGGCAACAAGTGCCCCACACCCGGCTGCAATGGGCAGGGCCACGTCACCGGCCTTTACACACACCATAGAAGTCTGTCAGGATGCCCAAGAAAGGATAAAGTTACACCGGAGATTTTGGCGCTGCACGAAACGATCTTGAAGTGTCCCACGCCCGGGTGCAACGGTCGAGGACACGTGAGCTCGAATCGCAGCACGCATCGGTCTCTTTCCGGCTGCCCTACAGCCGCCGCACGCAAGGCCGCCGCTAGAACACAACGCACACGTCCTACCTTATCGATAACAGCAGCTCCGATTTCGGTATCCGTGTCTCTATCGAGCGACAACGGGTCGAACCCAAACTCGACGCGTGTCTCCCACGAGAGGGAGTCAGCGGCCTCGCCGCCTAGTCCGCCCGTGAAGAGAGAAGCCCCCGAGCTGCTCGTGCCGAAGCGAGAGGCCGCCGAGCCAGAGCGCGACTCCCCCGCAGGGATGGAGACGCGCCACGCCGGCTACGGCGCGCCACCCGACCAACGATCACCGTACGATCGACCACCGGACGACCACGTCCGATCCTATAGTCAAATGAACGAGACTCGATATGGGTACGAGTCTCGTTGCTACGAAGGAGCGCCTGCCTTCGAACGCTACGACCCTCAGTGTCCGCAGAGGTCGTACGGTTGGGAGGAGGAACGCTACCACGATCCACATCTACCCACGCCCATGAAGACGGACCAATCAGAACAGGAGACCAGTTCTGGACCTATTTATCCTAGACCAATGTACCACTACGAGACTGGTGGTGGAGTTGCCGGTGTGAGCGCAATGGGACCAGGCGTTCCACCAGGTTTCTCGGCCATCAATTTGTCGGTGAAGATCGCAGCTGCGCAGGCCCAACGTCCCCGAAGTCCCACGCCCAGAGATCCGAGAGATCCGAGGCCGGCAATAGACCTTTCCAGCTCAAGTGGTAGTCCACAGGGTCCATACGCGTCGCCGGTGTACACGAGCGCGGGCGGGGGCAGCGGCGGCGCGCGGGGCAGCCCGCAGCCGGGAGCTTCGCCCCAGCTAACGGCCAGCCCTCAGGTGCCCAGTCCACAGGGACAGACCCTCGACCTTAGCGTGTCCCGTTTACCACATAGTCGAGGCTTCCCCGGCGCCGTTTCCTATAGTCGAGAATCTACCCCGGACAGCGGCGGTAGCCATCCGTACCTGGAAGCCTACCACCGAGACACCGCAGGTTACGGTGGTGTCAGTCCGCACCCAGTGGCGGGATACGGGCTAGGTCAGCCGGATTACGCGGCGGCTGCGGCAGCGGCGGGCTACGGCGGATACCAGTACCAGTGCGGCGCCTATCCGCCTCCGCCGGCGTACCCACCTCACGCACCGCCATATTCTCCGCCCTGCTACATGCCGCCGCCACACGCGCCGCACGACAAGCCAAAGGATACAAGACCGATGTGCATACTTCGCCCAGACAAAGATATGCATCGAAACAGTCATCATCGCGAGTTCGACGAGTTTTATGGGAAACTGAGTAGCCGGATGCGAGATTCGAGGGACCTGATCCAGTGTCCGGTGGAGGACTGCGACGGGTCCGGCCACATTTCGGGACACTTCGCGTCGCACCGCAGCCTGTCCGGGTGTCCGCGCGCCGATCGCTCCCAACTCCAGCCACATTCCCAAGAGCTGAAGTGTCCGACGCCGGGCTGTGATGGATCCGGTCACGTCACCGGCAACTATTCCTCACACCGGTCCCTCTCCGGCTGCCCGAGGGCCAACAAGCCGAAGAGCAAACCCAGAGACGGCCAGGATTCGGAGCCTTTGAGCGCATCGGGCTGTCCAATTGCGAATCGGAATAAAATGCGGGTCTTGGAGAGTGGCGGAACCGTCGAACAACACAAAGCCGCTGTGGCCGCAGCCGCTTCAGCCATTAAATTCGATGGAGTGAACTGTCCAACGCCCGGATGTGATGGATCTGGCCACATAAATGGATCCTTTTTGACGCATCGGTCGCTCTCCGGGTGTCCAGTAGCCGGAGCCGCCACTCCCACGCCGCAACCAACGAAAAAACCCAAGTACCCGGATGATATAACACCGCTGTATCCAAAACCATATTCAGGAATGGAGATGAACATGCAAACGGGAAACGGTGAAGATCTGATGACATTAGAACAAGAAATTACCGAACTTCAACGGGAAAACGCAAGGGTCGAATCGCAGATGATGCGCCTGAAGTCCGACATCAACGCGATGGAAACTCAACTGACACATGGGGAGCGAGAGAATCAACTGATAACCCAACGCAACAGCAACTTGAACGAGTACTACGAGAGTCTGCGGAATAACGTGATCACGCTGCTCGAGCACGTACGCATCCCGGGGGGAGGCGCCGCCCCCGCCCCGCCCGCGCCCGCCCCCGCCGCACCCGACAAGCCCGCGCACGACAACTTCGACTCCTACCTCACCAAGCTGCAGACGCTCTGCTCCCCGGACGGGTACTGTCCGGACGAGAACCGCCCAATCTACGAAACCGTCAAAAACGCGCTCCAGGACTTCACGGTTAGGTTAGATAAAATGAAAGTACCCCGCCAGAAAAATCAAAACAATCCCGCTCACAAAAACGTTAAATCAGAACAAGAAAATACAAATGAATCACAAAAGAAAAAAGTGAAACGCTATTTTGAATTGGATAAACCGGACAGTAAAACGGACACAAAAACAGATGAAGTTAAAGTTTATAATGTGAAGGTGACTCCTAGAATTCTCTGGAATCAAAAACAGAAGGATCAAAAAAGACAATTCTTAAAAAATGAATATGGAAACACATTCAGTCAAAGGAAACAGAAGAAAAAGTATCCAGGGAAAGCTCCTATTGACCCCAAACGATTGGAGAAGCATTCCAGAGGTGAAGGCTTACAAGGAATTGGTGTTAGAAACCCAATACATAAATTAAAATTACAAAAAAAAGAAAAATTATACCAGAAGGCATTAGAACAAGCTGCTCGTTCTGAGATATTATTAACTGAAGACCAAGGTTATGTCGAATTAGAAGACGAAGATTCAAATACTCGAGCTATAAACCAACAGATTATTGCTCGGAATATTGATATAGCAGCTGCGACAAAAATATTTGAATTAAATTTAGATTTTGGTCCGTACAGAGCTAAATATTCAAGGAATGGTAGATATTTACTATTAGGCAGCAAAAAAGGGCACCTGGCCTCATTCGACTGGGTAACGAAAAAGTTAAACTTCGAAATTAATGTGATGGAGTCAATACATGACATCAGTTGGCTACATATAGAAACAATGGTTGCTGCCGCACAAAAGGATTGGTTGTACATTTACGATAACACCGGCACTGAACTACACTGTGTGAAAACGATCAGCAAAGTACTCAAAATGGAATTCTTGCCCTACCACTTTCTGTTGGCATCTGTGAACGAATACGGTTTCTTATCATGGCTGGACATATCAATAGGAGAGATAGCGGGAGAATGTAACAGCCGGGCAGGAAGACCGAAAGCGATGACACATAACCCCTACAACGCCACGCTCTGTCTCGGCGATTCTAAGGGAGTGGTCTCATTGTGGGCTCCGACCGTGAAGGAACCCTTAGCAAAGATCCTGTGCCATAAAACACCCGTGTCTGCTATTTCCGTGGACAATAGGGGATTGTACATGGCGACCTCTGGTGTTGACAGAAGTATAAAAATTTGGGACATTAGGAACTTGGATGGTCCATTGCAGCACTATAAAGTGTGGTCACCACCAGTTGACTTAGACTTCTCGCAGAAAGATATGCTTGCTGTGGGGTTCAACGAAACCGTCGAGATATACAGTAATTGCTGCACACAAACTGTATCAAAACCGTATTTACGACACAAGATGGCGAAGACTGTGAACAATTTCAAGTTCTGTCCTTTTGAAGATGTCCTCGGTATAGGCACTGATCGCGGTTTCACAAGCATTATCGTTCCAGGCAGTGGTGAACCAAACTTCGATGCTTTGGAGAGCAATCCATTCCAAACGAAAAAACAGAGGAAAGAAGCCGAGGTCAAGGCGCTGCTCGAGAAGATTCCAGCAGAACTCATCACTCTTAATCCGTTCGAGGTCACGGAAGTGGATGTACCTACGATGAAGGATATTATAGACAGCAAAAAGAAATTACTGCACGTTAAGCCCAAGAAAGTGGATATGACACCGCGTCGTAAAAACAAAGGTCAAACTCATATTGCAAGAAAGAAAATTATAAAGGATGCCGCCAGGAGGGACCACATTGAAAAACTGAAAGCAGCCAGCGCGCTTTATGAAAAAGATGAACAAAAGGAAAAACCCGTTAGAAAACAATCGTTCGGTGTTTTAGATAGATTTGTCTCTAATCCTACTAAAAGTAAAAAATAA
Protein
MYIRAYGISKTVLRAVICYRSTPLTAQTGITQINKRRLEFGVDVETFKIGERRIERTNSEASMEDEDVIGKRRRRLLDDERRDELEPRRRPLPVHRPYTTRQPDQDEETLIKETQAALKTLSGSWTRDHTIVHTGDVTDEANGFENLFADGRQEHNNMLPSPPSPSSESNDTTQKSFAMRYEQQEHNINGVNGNIELNTCGEIAEDQESRHSNYDGTNFDELGDSSSNELEIDMSDRFDDKFDDDREFKFKRKGDIVSVNKQSLYNAYKAATAALPYTTQSAFKPPAEVKHRLHGPTLPSEPFGGYSNDHEKSSVNRASKQYTVLQPAGVGSRAATALQEARAVPTAQPARDSRPLTALSPPVVREGNKCPTPGCNGQGHVTGLYTHHRSLSGCPRKDKVTPEILALHETILKCPTPGCNGRGHVSSNRSTHRSLSGCPTAAARKAAARTQRTRPTLSITAAPISVSVSLSSDNGSNPNSTRVSHERESAASPPSPPVKREAPELLVPKREAAEPERDSPAGMETRHAGYGAPPDQRSPYDRPPDDHVRSYSQMNETRYGYESRCYEGAPAFERYDPQCPQRSYGWEEERYHDPHLPTPMKTDQSEQETSSGPIYPRPMYHYETGGGVAGVSAMGPGVPPGFSAINLSVKIAAAQAQRPRSPTPRDPRDPRPAIDLSSSSGSPQGPYASPVYTSAGGGSGGARGSPQPGASPQLTASPQVPSPQGQTLDLSVSRLPHSRGFPGAVSYSRESTPDSGGSHPYLEAYHRDTAGYGGVSPHPVAGYGLGQPDYAAAAAAAGYGGYQYQCGAYPPPPAYPPHAPPYSPPCYMPPPHAPHDKPKDTRPMCILRPDKDMHRNSHHREFDEFYGKLSSRMRDSRDLIQCPVEDCDGSGHISGHFASHRSLSGCPRADRSQLQPHSQELKCPTPGCDGSGHVTGNYSSHRSLSGCPRANKPKSKPRDGQDSEPLSASGCPIANRNKMRVLESGGTVEQHKAAVAAAASAIKFDGVNCPTPGCDGSGHINGSFLTHRSLSGCPVAGAATPTPQPTKKPKYPDDITPLYPKPYSGMEMNMQTGNGEDLMTLEQEITELQRENARVESQMMRLKSDINAMETQLTHGERENQLITQRNSNLNEYYESLRNNVITLLEHVRIPGGGAAPAPPAPAPAAPDKPAHDNFDSYLTKLQTLCSPDGYCPDENRPIYETVKNALQDFTVRLDKMKVPRQKNQNNPAHKNVKSEQENTNESQKKKVKRYFELDKPDSKTDTKTDEVKVYNVKVTPRILWNQKQKDQKRQFLKNEYGNTFSQRKQKKKYPGKAPIDPKRLEKHSRGEGLQGIGVRNPIHKLKLQKKEKLYQKALEQAARSEILLTEDQGYVELEDEDSNTRAINQQIIARNIDIAAATKIFELNLDFGPYRAKYSRNGRYLLLGSKKGHLASFDWVTKKLNFEINVMESIHDISWLHIETMVAAAQKDWLYIYDNTGTELHCVKTISKVLKMEFLPYHFLLASVNEYGFLSWLDISIGEIAGECNSRAGRPKAMTHNPYNATLCLGDSKGVVSLWAPTVKEPLAKILCHKTPVSAISVDNRGLYMATSGVDRSIKIWDIRNLDGPLQHYKVWSPPVDLDFSQKDMLAVGFNETVEIYSNCCTQTVSKPYLRHKMAKTVNNFKFCPFEDVLGIGTDRGFTSIIVPGSGEPNFDALESNPFQTKKQRKEAEVKALLEKIPAELITLNPFEVTEVDVPTMKDIIDSKKKLLHVKPKKVDMTPRRKNKGQTHIARKKIIKDAARRDHIEKLKAASALYEKDEQKEKPVRKQSFGVLDRFVSNPTKSKK

Summary

Uniprot
NA  
ProteinModelPortal
NA  
PDB
5OQL     E-value=2.09783e-87,     Score=828

Ontologies

KEGG
101736789    K23193 myelin transcription factor 1-like protein | (RefSeq) myelin transcription factor 1
GO
GO:0005515   GO:0003700   GO:0005634   GO:0006355   GO:0008270   GO:0005216   GO:0006811   GO:0006541   GO:0016812   GO:0016597  

Topology

Length:
1825
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.09572
Exp number, first 60 AAs:
0.09314
Total prob of N-in:
0.00469
outside
1  -  1825
 
 

Population Genetic Test Statistics

Pi
22.997862
Theta
29.675744
Tajima's D
-1.312726
CLR
2.874736
CSRT
0.0838958052097395
Interpretation
Uncertain
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