HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	9.9	1.1	0.016	0.97	3	23	602	623
2	5.1	0.4	0.55	33	1	22	1000	1021
3	8.4	0.1	0.049	3	3	23	1097	1118
4	10.7	2.4	0.009	0.54	2	23	1125	1147
5	5.4	0.0	0.43	26	1	22	1173	1194
6	8.8	3.2	0.038	2.2	1	23	1201	1223
7	9.6	0.2	0.02	1.2	1	23	1229	1252
8	13.4	1.4	0.0013	0.077	1	23	1264	1286
9	10.7	3.4	0.0094	0.56	1	23	1336	1359
10	9.9	1.1	0.017	0.99	1	23	1419	1442
11	8.3	2.0	0.052	3.1	2	23	1471	1493
12	7.7	0.1	0.083	5	3	23	1500	1521
13	6.5	0.1	0.2	12	1	21	1566	1586
14	15.5	0.8	0.00027	0.016	1	23	1597	1619
15	15.6	0.2	0.00025	0.015	3	23	1710	1731
16	25.8	1.3	1.5e-07	9.2e-06	3	23	1738	1758
17	9.1	1.1	0.03	1.8	2	23	1778	1799
18	5.2	0.0	0.52	31	1	23	1822	1844
19	7.3	0.6	0.11	6.7	1	23	1850	1873
20	16.2	0.8	0.00017	0.01	1	23	1881	1904

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.016
                    ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                    C +Cg+s++ ++n +rH  t H
  KWMTBOMO05841 602 CLVCGRSYRYSHNARRHELTaH 623
                    99***************99988 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.55
                     EEETTTTEEESSHHHHHHHHHC CS
        zf-C2H2    1 ykCpdCgksFkrksnLkrHirt 22  
                     ++C  C  +F +   L +H+r+
  KWMTBOMO05841 1000 HTCYNCVVTFGHIGALLSHMRS 1021
                     79******************95 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.049
                     ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2    3 CpdCgksFkrksnLkrHirt.H 23  
                     Cp+Cgk+ ++  +L++H+++ H
  KWMTBOMO05841 1097 CPVCGKKNTNYPSLVKHLKIiH 1118
                     *******************988 PP

  == domain 4  score: 10.7 bits;  conditional E-value: 0.009
                     EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2    2 kCpdCgksFkrksnLkrHirt.H 23  
                      C +C+ +F +  +L++Hi t H
  KWMTBOMO05841 1125 FCQHCDSKFEQAADLNKHIYTeH 1147
                     6******************9999 PP

  == domain 5  score: 5.4 bits;  conditional E-value: 0.43
                     EEETTTTEEESSHHHHHHHHHC CS
        zf-C2H2    1 ykCpdCgksFkrksnLkrHirt 22  
                     y C++C+  F + +  + H+  
  KWMTBOMO05841 1173 YSCTECNAIFETVDAWTDHQVA 1194
                     89*****************865 PP

  == domain 6  score: 8.8 bits;  conditional E-value: 0.038
                     EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2    1 ykCpdCgksFkrksnLkrHirtH 23  
                     + C+ C k+F r+s+L  H +tH
  KWMTBOMO05841 1201 HHCDQCEKKFLRPSELAEHKNTH 1223
                     67********************9 PP

  == domain 7  score: 9.6 bits;  conditional E-value: 0.02
                     EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2    1 ykCpdCgksFkrksnLkrHirt.H 23  
                     y+C+ C+ s++++  L  H +  H
  KWMTBOMO05841 1229 YPCSLCSNSYSTPQKLADHVQQiH 1252
                     99*****************99877 PP

  == domain 8  score: 13.4 bits;  conditional E-value: 0.0013
                     EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2    1 ykCpdCgksFkrksnLkrHirtH 23  
                     ++C++C +sFk++  + +H+r+H
  KWMTBOMO05841 1264 FYCDICIRSFKSRQAYSNHMRIH 1286
                     89********************9 PP

  == domain 9  score: 10.7 bits;  conditional E-value: 0.0094
                     EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2    1 ykCpdCgksFkrksnLkrHirt.H 23  
                     y C++Cgk F +k n  +H ++ H
  KWMTBOMO05841 1336 YCCDICGKGFMHKKNIWKHKKVlH 1359
                     88******************9988 PP

  == domain 10  score: 9.9 bits;  conditional E-value: 0.017
                     EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2    1 ykCpdCgksFkrksnLkrHirt.H 23  
                     y C+ C ++F+ +  L +H r  H
  KWMTBOMO05841 1419 YSCELCYQRFPVRNALWKHKRNkH 1442
                     89*******************988 PP

  == domain 11  score: 8.3 bits;  conditional E-value: 0.052
                     EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2    2 kCpdCgksFkrksnLkrHirt.H 23  
                      C++C+  F +k ++ rH++  H
  KWMTBOMO05841 1471 SCTICKINFADKKSYYRHRKNfH 1493
                     5******************9988 PP

  == domain 12  score: 7.7 bits;  conditional E-value: 0.083
                     ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2    3 CpdCgksFkrksnLkrHirt.H 23  
                     C++Cgk+ ++  +L  H++  H
  KWMTBOMO05841 1500 CKICGKPLSSTLELYEHLKAaH 1521
                     *****************99877 PP

  == domain 13  score: 6.5 bits;  conditional E-value: 0.2
                     EEETTTTEEESSHHHHHHHHH CS
        zf-C2H2    1 ykCpdCgksFkrksnLkrHir 21  
                     y+C+ Cgk F     L++H++
  KWMTBOMO05841 1566 YPCEACGKQFVGLLALQNHQC 1586
                     89*****************86 PP

  == domain 14  score: 15.5 bits;  conditional E-value: 0.00027
                     EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2    1 ykCpdCgksFkrksnLkrHirtH 23  
                     ++C++C+ks+++ s Lk+H+  H
  KWMTBOMO05841 1597 FECEICHKSYTSISALKSHRGWH 1619
                     89*****************8766 PP

  == domain 15  score: 15.6 bits;  conditional E-value: 0.00025
                     ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2    3 CpdCgksFkrksnLkrHirt.H 23  
                     C++C+k F+ +  ++rH+   H
  KWMTBOMO05841 1710 CGICDKEFTKRAAYQRHMDEvH 1731
                     ******************8877 PP

  == domain 16  score: 25.8 bits;  conditional E-value: 1.5e-07
                     ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2    3 CpdCgksFkrksnLkrHirtH 23  
                     Cp+C+ksF+rks L +H+++H
  KWMTBOMO05841 1738 CPVCDKSFTRKSTLIVHMKKH 1758
                     ********************9 PP

  == domain 17  score: 9.1 bits;  conditional E-value: 0.03
                     EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2    2 kCpdCgksFkrksnLkrHirtH 23  
                      C+ Cg  + + + L++H ++H
  KWMTBOMO05841 1778 ACDLCGAQYDNADALRSHKMRH 1799
                     6********************6 PP

  == domain 18  score: 5.2 bits;  conditional E-value: 0.52
                     EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2    1 ykCpdCgksFkrksnLkrHirtH 23  
                     ++C  Cg    ++ +L +H+ +H
  KWMTBOMO05841 1822 FTCAQCGDGVATPRDLIAHRTMH 1844
                     89******************998 PP

  == domain 19  score: 7.3 bits;  conditional E-value: 0.11
                     EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2    1 ykCpdCgksFkrksnLkrHirt.H 23  
                     + C++C+  F r  +L +H r  H
  KWMTBOMO05841 1850 FFCNICKVYFARALDLSTHTRArH 1873
                     78******************9888 PP

  == domain 20  score: 16.2 bits;  conditional E-value: 0.00017
                     EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2    1 ykCpdCgksFkrksnLkrHirt.H 23  
                     ++C  C++s+ +k +L+rHi + H
  KWMTBOMO05841 1881 FPCAMCDRSYMNKKSLQRHIEMsH 1904
                     89******************9988 PP