HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	18.2	2.7	3.9e-05	0.0023	1	23	241	265
2	26.9	1.0	6.7e-08	4e-06	1	23	271	295
3	22.7	1.9	1.4e-06	8.4e-05	1	23	301	323

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 3.9e-05
                    EEET..TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                    + C+  +Cgk++   s+Lk+H+r H
  KWMTBOMO05808 241 HSCHipGCGKVYGKTSHLKAHLRWH 265
                    68*********************99 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 6.7e-08
                    EEET..TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                    ++C+   Cgk+F+r+++L+rH+rtH
  KWMTBOMO05808 271 FVCNwlFCGKRFTRSDELQRHLRTH 295
                    89**********************9 PP

  == domain 3  score: 22.7 bits;  conditional E-value: 1.4e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + Cp+C+k+F r+++L +H +tH
  KWMTBOMO05808 301 FACPVCNKRFMRSDHLAKHVKTH 323
                    78********************9 PP