HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	18.9	0.3	2.3e-05	0.0014	2	22	265	285
2	11.4	0.4	0.0055	0.33	2	23	369	392
3	14.8	0.5	0.00046	0.027	2	22	440	460
4	12.4	1.1	0.0027	0.16	2	23	922	944

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.3e-05
                    EETTTTEEESSHHHHHHHHHC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt 22 
                    kC  C+ksF++  +L++H++ 
  KWMTBOMO05407 265 KCVWCKKSFNSLADLTVHMKE 285
                    8******************97 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.0055
                    EETTTTEEESSHHHHHHHHHC..C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt..H 23 
                    kC  C +sF++  ++++H+++  H
  KWMTBOMO05407 369 KCMWCAESFRSLAEMTSHMQRtqH 392
                    8******************98666 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 0.00046
                    EETTTTEEESSHHHHHHHHHC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt 22 
                    +C++C++ F++  +L +H+ +
  KWMTBOMO05407 440 TCKVCDQAFSSLKELSNHMVK 460
                    8******************76 PP

  == domain 4  score: 12.4 bits;  conditional E-value: 0.0027
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    kC  C+ +F +k  +++H+++ H
  KWMTBOMO05407 922 KCALCDTPFISKGAYRHHLSKmH 944
                    8*******************999 PP