Gene

KWMTBOMO05407

Pre Gene Modal

BGIBMGA006678

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_protein_tiptop-like_[Bombyx_mori]

Location

Bomo_Chr10(+):1002046-1006626      View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 3.915

CDS

ATGATTGTCGAGCCCGACCACGTGAGGGAGAGCCCGAGATGTCTTTCGCGGGAGTCGTCGGGTGCGCCGCGATGTCCCTCCAATGACTCGGTGTACTCCGGACGTAGCGGGGCTGGCCTTCCTCTGCCCGCCGCGCTCACCGCCGCTCTACCAGCCGCACTGCTTCCACCTCACTCAGCAGCGGTCGCCGCGTACCTCGGCGCAGCAGCCGCAGCCGCCGCCCAGCAACGTTTGCTCATGTCCTGCCACGAGGACCTCACTGACCCCGAACGTGCAGATGCCGTACTTGACTTTAGCACAAAACGTAGCGACTCGCCCCACGACGACGAGGATATAGAGGATGCCGTCAACCTCAGCAAAAACGAAAACGGTCCTCTGGACCTTTCGGTTGGGACGAGAAAAAGGGGACCAGAAGACTCGCCTTCACCTGTTCCCATTAGAAAAAGTTCTAGACCTGCAGAGTACAAACCAACCCCGTCTCCGTGGTCTACGCCTGTCGCCCCTCATTTACCTTATTTTGCCGCTGCAGTTGCTGCTGCCAGTCTGTCGCCTAAAGGAGGTGTTCCTGCTGACTGGAATGGTAAACTGAAGCACGGCGGCCCTACACCGAACGACGCAACTAAAGCATTAGAAAAAATGAGTGAACTTAGCAGACTCGGTGGGGAAGAACTCTTCCGATCAGTACAAACAGCTGCTTTAGGTGCCGGCTTGGCTCCGAACGCAGCCGCCAGACATTCGGCTTGGCAATCTCATTGGCTCAACAAAGGAGCGGATCAAACGAAAGATGTACTTAAATGTGTGTGGTGTAAGAAGAGCTTCAATTCTCTAGCAGATCTTACAGTTCACATGAAAGAGGCCAAGCATTGTGGTGTAAATGTGCCAGTGCCACCATCTACAGGTGCACCGATCCCACCATCCTTACAAACTCCCACTAGTTCACCATCGACTCCATCGCACAATTCATCTTCTTCTAGCGGTTCTTCGAAACCGTCACAAAGCGATTTAAATATGTTAATTAAAGAAAACATGCCGATTCCTAGAAAGCTAGTTAGGGGTCAGGACGTTTGGTTAGGTAAAGGCGCTGAGCAAACTAGGCAAATATTGAAATGTATGTGGTGTGCAGAAAGTTTTCGTTCTTTAGCTGAGATGACGAGTCACATGCAACGCACTCAGCATTATACGAATATTATTTCTCAAGAGCAAATTATTTCATGGAAATCATCTGAAGACGGAAAGGGCTCCAACGCAAGCGGTCCGGGTACTAATAATTCAGTTCCACCTACTACGGGCACCAGTAGTCACGTCAGCGCCGTTCTCACTTGTAAAGTTTGCGATCAAGCATTCAGTTCATTGAAAGAACTAAGTAATCACATGGTCAAGAACTCTCATTACAAGGAACACATAATGCGATCGATTACCGAAAGTGGAGGTAGACGACGCCAGACTCGTGAGAAGCGAAAGAAATCATTGCCAGTCAGGAAACTCCTTGAATTAGAAAGAGCCCAGCATGAATTTAAAAACGGAGACGGTAACGGCGTGCCTATGGGTAAACCAATTCGTGATTATGGCACCGGAAGCCGCATCACGTGTGAGAAATGTGGGGACAAAATCGAGACCGCAGTATTTGTGGAGCACATTAGGCAGTGTATCGGAGCACCGGTTTCTAACAGTCAAAGGAATTTTCTGAAGAGCGCATTAATGTCGAACAACATAATTCCTCCAGACGTGCCGGGACACATTACCCCCACCAGCCGTGATGGACGCAAAAGCATCAACGAAGAACTGCCTTCCCCTGGGTCCGCACACCACCGATCTCCTTCGTCGGTTAATGATTCATCTCCCTGTTCCAAAGATCCCAATGTGAACATGGACAAGAGCTCATCACCATCGGTACTTAACGCCATAGAACAGCTGATTGAGAAGAGTTTTGACACTCGATCACGACATTCAGTACCGGGAATGCCCGGAGGCGCATCTCACGCTCCGATAGGATCAAGTATCCTTAAGCGCTTGGGCATAGACGAAAGCGTTGATTATACAAAACCTTTGGTTGATGCTCAAACAATGAACATGCTCAGAAACTATCACCAGCAGTCCGGTTATGGACGGCGAGAGCGCAGCGGTAGCGAATCTAGTTCTATGTCTGAAAGAGGTGGCAGCAGGGTTGAGTCTCTCACACCCGATAGAAAGCTAGATTCATATCACATGACACCACGCACCACTCCTGATACTCGCGGCTCACAGACTCCAGCTTCCGAAGATCGACATGAAATACGGATAAAAAAAGAAGTAGACGAAGAGGATCAACGAGAAAACGGCGTAGATTTGAGTAATCAACCAGTGCGGGTGAAGACTGAGATGGAAGAAGAAGAGGAACCTCTACGACCAAGGAGCTCTACGGAAGAAGATATCAAACCAGTCGTACCCAAACGCGAGAGCGAGGGTCCCAGCCCAGCCGCTAGCCCCCGCAGTCCGTCCAGTGATCGCTCAGGCAACACTCCGGGTGCTGATAGGAAACCGGCTTCTAGTTTAGGGGCTCTTTCCTCTATGTTCGATAATCTTGCGGGAGGCGGACCGTCTAATGAGCCAAGTTCTTCCCGGCGCGGTGGCAGCCATCCTCTGGCCGCACTACAAAAGCTGTGCGACAAGACCGAGAACACACCGGCACGTGCATCTGCGCCGGCGCAATCTCCGGCCGGGCCGCCCAGCATCCTCACCTTCAGCTGGGCCTGCAACGATGCCGTCGTCACAGATTCCGTTATGAAGTGTGCGCTGTGCGATACTCCATTCATTTCGAAGGGTGCATATCGCCACCACTTATCGAAAATGCACTTTGTGAAGGACGGTGCCTTGCCGGAGCCGGTGCCTCTGAAGGCGGGGTCGCCGGCGCCGCACAAGCCTGGCTCGGCGGCTGGCTCCCCGCAGGACCCCCGCAGCCCCGCGCAGACCTTCGACGAGAGCCCGCACTCCAAGTTCCTCAAGTACACGGAACTGGCCAAGCAGCTCTCCAGCAAGTACGTGTGA

Protein

MIVEPDHVRESPRCLSRESSGAPRCPSNDSVYSGRSGAGLPLPAALTAALPAALLPPHSAAVAAYLGAAAAAAAQQRLLMSCHEDLTDPERADAVLDFSTKRSDSPHDDEDIEDAVNLSKNENGPLDLSVGTRKRGPEDSPSPVPIRKSSRPAEYKPTPSPWSTPVAPHLPYFAAAVAAASLSPKGGVPADWNGKLKHGGPTPNDATKALEKMSELSRLGGEELFRSVQTAALGAGLAPNAAARHSAWQSHWLNKGADQTKDVLKCVWCKKSFNSLADLTVHMKEAKHCGVNVPVPPSTGAPIPPSLQTPTSSPSTPSHNSSSSSGSSKPSQSDLNMLIKENMPIPRKLVRGQDVWLGKGAEQTRQILKCMWCAESFRSLAEMTSHMQRTQHYTNIISQEQIISWKSSEDGKGSNASGPGTNNSVPPTTGTSSHVSAVLTCKVCDQAFSSLKELSNHMVKNSHYKEHIMRSITESGGRRRQTREKRKKSLPVRKLLELERAQHEFKNGDGNGVPMGKPIRDYGTGSRITCEKCGDKIETAVFVEHIRQCIGAPVSNSQRNFLKSALMSNNIIPPDVPGHITPTSRDGRKSINEELPSPGSAHHRSPSSVNDSSPCSKDPNVNMDKSSSPSVLNAIEQLIEKSFDTRSRHSVPGMPGGASHAPIGSSILKRLGIDESVDYTKPLVDAQTMNMLRNYHQQSGYGRRERSGSESSSMSERGGSRVESLTPDRKLDSYHMTPRTTPDTRGSQTPASEDRHEIRIKKEVDEEDQRENGVDLSNQPVRVKTEMEEEEEPLRPRSSTEEDIKPVVPKRESEGPSPAASPRSPSSDRSGNTPGADRKPASSLGALSSMFDNLAGGGPSNEPSSSRRGGSHPLAALQKLCDKTENTPARASAPAQSPAGPPSILTFSWACNDAVVTDSVMKCALCDTPFISKGAYRHHLSKMHFVKDGALPEPVPLKAGSPAPHKPGSAAGSPQDPRSPAQTFDESPHSKFLKYTELAKQLSSKYV

Uniprot

A0A1C9EGJ1   A0A212EVI1   A0A2H1WUG9   A0A194QHE5   A0A0N1I799   A0A0L7LKY3   + More
H9JAY3   A0A1E1WA08   D6X1P2   Q967X9   A0A0T6BCK3   A0A1B0CDQ8   A0A1W4WVG6   T1HHQ8   A0A1B0DRC9   A0A336LKI7   E0V8X9   A0A1B0GL62   A0A3Q0JR35   Q7PWB2   A0A182RNF9   A0A182H315   A0A1S4FHB9   A0A1Y1KB80   A0A182QPF9   A0A2P8YHP1   A0A2J7QDP7   A0A067QU69   A0A023F1Q3   A0A2R7WTX0   A0A0A9XIX9   A0A182K6Z6   A0A0L0BND2   A0A1A9WXB3   K7J8N6   A0A182TC34   A0A1I8MCW0   A0A182NBD3   A0A084VKM2   A0A182PNG9   B4GKM3   A0A0P8XHN0   B5DHA1   A0A3B0KA05   W8BZS7   A0A1B0BBR3   A0A1A9XLF6   A0A1I8PTG1   B4III1   B4P6F0   A0A182W9Z6   A0A182M973  

Pubmed

22118469    26354079    26227816    19121390    18362917    19820115    + More
20566863    12364791    26483478    17510324    28004739    29403074    24845553    25474469    25401762    26108605    20075255    25315136    24438588    17994087    15632085    24495485    17550304   

EMBL

KX778609    AON96607.1    AGBW02012180    OWR45502.1    ODYU01011150    SOQ56715.1    + More
KQ458793    KPJ04968.1    KQ461033    KPJ09967.1    JTDY01000726    KOB76090.1    BABH01008287    GDQN01007214    JAT83840.1    KQ971371    EFA10732.1    AF356647    AAK43700.1    LJIG01001884    KRT85056.1    AJWK01008139    AJWK01008140    AJWK01008141    AJWK01008142    ACPB03000468    AJVK01009039    AJVK01009040    AJVK01009041    UFQS01000003    UFQT01000003    SSW96736.1    SSX17123.1    DS234986    EEB09835.1    AJWK01034351    AAAB01008984    EAA14779.5    JXUM01106407    KQ565052    KXJ71407.1    GEZM01087322    JAV58772.1    AXCN02000626    PYGN01000587    PSN43770.1    NEVH01015817    PNF26705.1    KK852946    KDR13419.1    GBBI01003469    JAC15243.1    KK855497    PTY22831.1    GBHO01023655    JAG19949.1    JRES01001605    KNC21537.1    AAZX01000111    AAZX01000114    ATLV01014233    KE524948    KFB38516.1    CH479184    EDW37189.1    CH902624    KPU74390.1    CH379058    EDY69676.1    OUUW01000022    SPP89542.1    GAMC01004332    JAC02224.1    JXJN01011612    CH480843    EDW49731.1    CM000158    EDW89907.1    AXCM01001343   

Proteomes

UP000007151    UP000053268    UP000053240    UP000037510    UP000005204    UP000007266    + More
UP000092461    UP000192223    UP000015103    UP000092462    UP000009046    UP000079169    UP000007062    UP000075900    UP000069940    UP000249989    UP000075886    UP000245037    UP000235965    UP000027135    UP000075881    UP000037069    UP000091820    UP000002358    UP000075901    UP000095301    UP000075884    UP000030765    UP000075885    UP000008744    UP000007801    UP000001819    UP000268350    UP000092460    UP000092443    UP000095300    UP000001292    UP000002282    UP000075920    UP000075883   

PRIDE

H9JAY3   

Pfam

PF12756   zf-C2H2_2        + More
PF00096   zf-C2H2

Interpro

IPR041661   ZN622/Rei1/Reh1_Znf-C2H2        + More
IPR026807   Tio/Tsh       
IPR027008   Teashirt_fam       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       

SUPFAM

SSF57667   SSF57667       

ProteinModelPortal

A0A1C9EGJ1   A0A212EVI1   A0A2H1WUG9   A0A194QHE5   A0A0N1I799   A0A0L7LKY3   + More
H9JAY3   A0A1E1WA08   D6X1P2   Q967X9   A0A0T6BCK3   A0A1B0CDQ8   A0A1W4WVG6   T1HHQ8   A0A1B0DRC9   A0A336LKI7   E0V8X9   A0A1B0GL62   A0A3Q0JR35   Q7PWB2   A0A182RNF9   A0A182H315   A0A1S4FHB9   A0A1Y1KB80   A0A182QPF9   A0A2P8YHP1   A0A2J7QDP7   A0A067QU69   A0A023F1Q3   A0A2R7WTX0   A0A0A9XIX9   A0A182K6Z6   A0A0L0BND2   A0A1A9WXB3   K7J8N6   A0A182TC34   A0A1I8MCW0   A0A182NBD3   A0A084VKM2   A0A182PNG9   B4GKM3   A0A0P8XHN0   B5DHA1   A0A3B0KA05   W8BZS7   A0A1B0BBR3   A0A1A9XLF6   A0A1I8PTG1   B4III1   B4P6F0   A0A182W9Z6   A0A182M973  

PDB

2DMI     E-value=0.0011377,     Score=104

KEGG

101737217    no KO assigned | (RefSeq) protein tiptop-like

GO

GO:0000122   GO:0048730   GO:0003676   GO:0048749   GO:0005634   GO:0003682   GO:0006357   GO:0007380   GO:0061330   GO:0046872   GO:0008270   GO:0006508   GO:0006810   GO:0004889   GO:0005216   GO:0045211   GO:0016491   GO:0003824  

PANTHER

PTHR12487   PTHR12487:SF7  

Length:

1007

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.29547

Exp number, first 60 AAs:

0.18647

Total prob of N-in:

0.01276

outside

1  -  1007

 

 

Pi

207.68357

Theta

188.452591

Tajima's D

0.413387

CLR

0.531608

CSRT

0.488025598720064

Interpretation

Uncertain